Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju07g2163 ATGGGCTTGTTGTTAGGAGAAAAAGGGTCCATTGGCAGTGCTGGCAATGAAGTGGTGAAAGTGAAGAAAGAGAAGACTCCAGAACAAATATTTTTTCCTGTTCTTGAATTCCTAACCTCTTGTGTACATAAAATGAGTAGCCTGGTTGAAAGGCTTCGTGTAAGATCAGATCGCAAGCCAGTTTATAATATTGATGAGTCAGATGATGATGACTTTTTGCCTGGGAAACCTGGGAGAACTGAGGAAATGTTTGAGAGGATAGTTAGAAGTGATGCTAAAGAGGACTCATGCCAAGCCTGTGGAGAAAGTGAAGATCTTCTTAGCTGTGAAACTTGTACTTATGCTTTTCATCCCAAGTGCTTACTTCGACCACTTAAAGCTCCGCTTCCAGATAATTGGAGGTGCCCTGAATGTGTTAGCCCGTTAAGTGATATTGAAAAGATATTAGATTGTGAAATGCGCCCGAATGTAGTGGGTGATGGCGAGGCCTCAAAACCAGGCTCAAAACAAATTTTTGTCAAACAATATCTTGTTAAGTGGAAGGGACTCTCATATTTGCACTGCACGTGGGTTTCAGAGAAAGAGTTTCTGAAAGCTTTCAAGTCAAACCCTCGTCTAAAGACCAAAGTGAACAATTTCCACCGCCAAATGGCATCTTCAAATACTTCTGAGGAAGACTTCGTTGCCATTCGACCTGAATGGACCATGGTCGATCGTATACTTGCTTGCAGGGGTCATGATGATGAAAAGGAATATCTTGTGAAATGGAAAGAACTTTCATACGATGAATGCTATTGGGAGTCTGAGTCTGATATTTCTGCATTTCAGCCAGAAATAGAAAGATATACAAAATTTCAGTCTAGGTCTAGGAGAAGTGCTTCTAGTAAGCAGAAAAGCAGTGGTAAGGATGCTGCCGAAGAAAAAAAGCAGAAAAGTAGTGGTAAGGATGGTGCTGAAGAAAAAAAGCTGCAGAAGGAATTTCAACACTATGAACATAGCCCCAGCTTTCTTTCAGGCGGCACCCTACATCCATATCAGCTTGAGGGTTTGAACTTCTTACGTTTCTCTTGGTCTAAGCAAACTCATGTTATACTTGCTGATGAAATGGGACTAGGCAAAACCATACAAAGTATTGCCTTTTTAGCATCTCTTTTTGAAGAGAGAGTGTTTCCCCATTTAGTGGTTGCTCCCCTGTCAACTCTCCGTAACTGGGAACGTGAATTTGCAACATGGGCACCTCATATGAATGTTGTTATGTATGTTGGATCTGCCCAAGCTCGAGCTTTTATAAGAGATTATGAATTTTACTTTCCAAAGAAACAGAAGAAGATCAAGAAAAAGAAACCTGGCAAAATAGTCAGTGAGAGCAAGCAAGATAGGATCAAATTTGATGTGCTTTTGACATCATATGAAATGATCAACTTTGACTCAGCATCATTGAAACCTATAATGTGGGAGTGCATGATAGTTGATGAAGGCCACCGACTTAAAAATAAGGATTCAAAATTATTTTCTTCATTGAAGCAATATTCAAGCAGACATCGTGTACTTTTGACTGGAACTCCTCTGCAGAACAATTTGGATGAACTTTTTATGCTAATGCACTTTCTTGATGCTGGGAAGTTTGGAAGCTTGGAAGAGTTCCAGGAAGAGTTTAAAGATATTAATCAGGAGGAGCAGATATCAAGGCTTCACAAAATGTTGGCTCCACATCTCCTTCGAAGAGTGAAGAAAGATGTGATGAAGGAGTTACCTCCTAAAAAGGAACTTATTTTAAGAGTTGAGTTAAGCAGCAAACAGAAAGAGTATTATAAGGCAATTCTGACACGTAATTATCAAATATTAACTCGTCGTGGTGGAGCACAGATTTCTCTTATCAATGTTGTTATGGAATTGCGCAAACTATGTTGTCATCCTTACATGTTGGAAGGAGTTGAACCAGATATTGAAGATCCAAAAGAAGCATATAAACAGCTACTGGAATCATCGGGGAAGTTGCAATTGTTGGACAAGATGATGGTGAAGCTTAAAGAGCAAGGACATAGAGTCCTTATATATTCACAATTTCAGCACATGCTGGACCTGCTAGAAGATTACTGTTCTTACAAGAACTGGCAGTATGAAAGGATAGATGGCAAGGTTGCTGGTGCTGAAAGACAGGTAAGGATAGATCGGTTTAATGCCAAAAATTCCTCGAGATTTTGCTTTCTTCTTTCAACCAGAGCTGGAGGATTGGGAATAAACCTTGCAACTGCTGACACAGTTATTATATATGACAGTGATTGGAATCCTCATGCTGATCTACAAGCTATGGCTAGAGCTCATCGACTTGGACAAACTAACAAGGTGTTGATTTATAGGCTTATAACACGAGGAACCATTGAAGAAAGGATGATGCAAATGACTAAGAAGAAAATGGTGTTAGAACATTTGGTTGTTGGAAGGCTAAAGGCTCAAAACATTAATCAGGAAGAGTTGGATGATATCATTAGGTATGGCTCAAAGGAGTTATTTGCTGATGAGAATGATGAAGCTGGCAAATCCCGCCAAATTCATTATGACGATGCCTCAATAGATAGATTGTTGGATCGTGAGCAAGTTGGAGTTGAAGAAGCTATATTGGATGATGAAGATGATGATGGATTTCTGAAGGCTTTTAAGGTGGCAAATTTCGAATATATTGATGAGGTTGAGGCTGCAGCAGAGGAGGCGAGGAAAAAAGAAATGGAAAAGAAAAATACTGTTAACAATTCAGATAGAGCAAATTTCTGGGAGGATTTGTTGAGAGACAGATATGAAGAGCATAAAACTGAAGAGTTTAGTTCCTTAGGCAAGGGCAAGCGAAACCGCAAGCTGATGGCTTCTGTTGAGGAGGATGATCTTGCTGGCCTAGAAGATGTAAGTTCTGATGGTGAAGATGACAACTATGAAGCAGATCTTACTGATGGTGATTCAAATTCAACTGGAACTACTTCAGGGAGAAGACCTTACAGAAAGAAAGCCCGTGCAGATAGTGCAGAGCCACTTCCTTTGATGGAAGGTGAAGGAAGATCATTCAGAGTACTTGGTTTCAATCAAAGCCAGAGGGCTCAATTTGTGCAAATTTTGATGAGGTTTGGAGTTGGTGATTATGATTGGAAGGAGTTTACTCCCCGCTTGAAACAGAAGACATATGAAGAAATCAAAGATTATGGAGTCCTTTTCTTGTCTCATATCGCTGAAGATATATCTGATTCTCCTACATTCTCAGATGGTGTTCCAAAAGAAGGACTTAGAATACATGATGTACTGGTTAGGATTGCAGTTCTTCTCTTGATAAGAGAGAAAGTGAAGTTTGCATCAGAAAAGGATCCTGGAACTCTCCTTTACTCAGATGACATCTTGTTGCGGTATCCTGGTTTGAAGGGTGGAAAGATATGGAAGGAGGAGCATGATATAGTGTTACTACGTGCTGTGTTGAAGCATGGATATGGAAGGTGGCAAGCAATTGTGGATGACAAGGATCTAAAGATTCAGGAGGTCATCTGTCAGGAGTTGAATCTTCCCATGATAAATTTACCAGTACCAGGCCAAGTTGGTACCCAGGCGCAAAATGGTGCAAATTCAACAAATGTAGAAGCAATGGCCAACCGATCTGGGGAAAATGGTGGGAATGATACGGTAGCTGATGGTGTGCCTGGTTCTGGTGATGCTAGGAATCAAACACAGTTATATCAAGAGTCTTCAATATTATATCATTTTAGAGACATGCAGAGAAGACAGGTTGAGTTTGTGAAAAAGAGGGTTCTTCTGTTGGAAAAAGGTCTCTATGCTGAGTACCAGAAAGAATACTTTGGTGACCATAATACAAATGAAGCCATGAATGTAGAATTTAAAAATGAACCAAAGGATTCAAATGTTCCAAGTTATAAATCAGGGGAGATTGACAAGAAAATGATTGATCAACTGCCTCAATTAGAAGAAATAGCTTCTGAAGAATTTTCTGCTGCTGCTTGTGATAGTGACCAGAATCGATCAGAATTGGTTCGACTTTACAATGAGATGTGCAGGGTTGCGGAGGAAAACACCATTGAATTGGCTGGAAGACGTGCAGATGTCGGTTTGATGAAGAACTTGCCTCCCCTAGAAACTGTTTGTGAAGACATCAATAAAATTCTATCACCCACTAAGCAAGATGATGGCACTGCGGAAATGCCAATACCGAGTCCAGGTATCAAAGCAGAGGCTTTATCAGAGAGTGAAGCTGCTGGCTCCAGATTGCCCTCAACTCCACAAGATGACAGCAAACCTGACAATGCAGTAAACAAGGAGGGAAAAGATGTGGCGATAGGGTCCGATAATGGAAAAGAAAGCGGATCAGAGACTATGGGAGGTGATGTTGAAATGGGCGAAGCTAACAATGATGCTGAAAGCTGA 4416 0.4044 MGLLLGEKGSIGSAGNEVVKVKKEKTPEQIFFPVLEFLTSCVHKMSSLVERLRVRSDRKPVYNIDESDDDDFLPGKPGRTEEMFERIVRSDAKEDSCQACGESEDLLSCETCTYAFHPKCLLRPLKAPLPDNWRCPECVSPLSDIEKILDCEMRPNVVGDGEASKPGSKQIFVKQYLVKWKGLSYLHCTWVSEKEFLKAFKSNPRLKTKVNNFHRQMASSNTSEEDFVAIRPEWTMVDRILACRGHDDEKEYLVKWKELSYDECYWESESDISAFQPEIERYTKFQSRSRRSASSKQKSSGKDAAEEKKQKSSGKDGAEEKKLQKEFQHYEHSPSFLSGGTLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSIAFLASLFEERVFPHLVVAPLSTLRNWEREFATWAPHMNVVMYVGSAQARAFIRDYEFYFPKKQKKIKKKKPGKIVSESKQDRIKFDVLLTSYEMINFDSASLKPIMWECMIVDEGHRLKNKDSKLFSSLKQYSSRHRVLLTGTPLQNNLDELFMLMHFLDAGKFGSLEEFQEEFKDINQEEQISRLHKMLAPHLLRRVKKDVMKELPPKKELILRVELSSKQKEYYKAILTRNYQILTRRGGAQISLINVVMELRKLCCHPYMLEGVEPDIEDPKEAYKQLLESSGKLQLLDKMMVKLKEQGHRVLIYSQFQHMLDLLEDYCSYKNWQYERIDGKVAGAERQVRIDRFNAKNSSRFCFLLSTRAGGLGINLATADTVIIYDSDWNPHADLQAMARAHRLGQTNKVLIYRLITRGTIEERMMQMTKKKMVLEHLVVGRLKAQNINQEELDDIIRYGSKELFADENDEAGKSRQIHYDDASIDRLLDREQVGVEEAILDDEDDDGFLKAFKVANFEYIDEVEAAAEEARKKEMEKKNTVNNSDRANFWEDLLRDRYEEHKTEEFSSLGKGKRNRKLMASVEEDDLAGLEDVSSDGEDDNYEADLTDGDSNSTGTTSGRRPYRKKARADSAEPLPLMEGEGRSFRVLGFNQSQRAQFVQILMRFGVGDYDWKEFTPRLKQKTYEEIKDYGVLFLSHIAEDISDSPTFSDGVPKEGLRIHDVLVRIAVLLLIREKVKFASEKDPGTLLYSDDILLRYPGLKGGKIWKEEHDIVLLRAVLKHGYGRWQAIVDDKDLKIQEVICQELNLPMINLPVPGQVGTQAQNGANSTNVEAMANRSGENGGNDTVADGVPGSGDARNQTQLYQESSILYHFRDMQRRQVEFVKKRVLLLEKGLYAEYQKEYFGDHNTNEAMNVEFKNEPKDSNVPSYKSGEIDKKMIDQLPQLEEIASEEFSAAACDSDQNRSELVRLYNEMCRVAEENTIELAGRRADVGLMKNLPPLETVCEDINKILSPTKQDDGTAEMPIPSPGIKAEALSESEAAGSRLPSTPQDDSKPDNAVNKEGKDVAIGSDNGKESGSETMGGDVEMGEANNDAES 1471
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju07g2163 1471 SMART chromo_7 233 287 IPR000953 -
Alju07g2163 1471 SMART chromo_7 142 218 IPR000953 -
Alju07g2163 1471 Pfam SNF2-related domain 362 642 IPR000330 GO:0005524|GO:0140658
Alju07g2163 1471 ProSiteProfiles Zinc finger PHD-type profile. 94 141 IPR019787 -
Alju07g2163 1471 Gene3D - 1094 1235 - -
Alju07g2163 1471 SMART PHD_3 96 139 IPR001965 -
Alju07g2163 1471 ProSiteProfiles Rubredoxin-like domain profile. 104 148 IPR024934 GO:0005506
Alju07g2163 1471 MobiDBLite consensus disorder prediction 296 321 - -
Alju07g2163 1471 MobiDBLite consensus disorder prediction 1388 1471 - -
Alju07g2163 1471 ProSitePatterns Zinc finger PHD-type signature. 97 138 IPR019786 -
Alju07g2163 1471 ProSiteProfiles Chromo and chromo shadow domain profile. 143 225 IPR000953 -
Alju07g2163 1471 Pfam CHD subfamily II, DUF1087 899 960 IPR009463 -
Alju07g2163 1471 SUPERFAMILY Chromo domain-like 223 287 IPR016197 -
Alju07g2163 1471 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 87 140 IPR013083 -
Alju07g2163 1471 Gene3D - 141 231 - -
Alju07g2163 1471 CDD CD1_tandem 145 215 - -
Alju07g2163 1471 SMART DUF1087_2 898 963 IPR009463 -
Alju07g2163 1471 Pfam Helicase conserved C-terminal domain 665 778 IPR001650 -
Alju07g2163 1471 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 354 540 IPR014001 -
Alju07g2163 1471 Gene3D - 585 809 IPR027417 -
Alju07g2163 1471 MobiDBLite consensus disorder prediction 1208 1232 - -
Alju07g2163 1471 Pfam PHD-finger 97 139 IPR019787 -
Alju07g2163 1471 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 330 575 IPR027417 -
Alju07g2163 1471 PANTHER CHROMODOMAIN-HELICASE-DNA-BINDING PROTEIN 3-RELATED-RELATED 67 1388 - -
Alju07g2163 1471 SMART helicmild6 694 778 IPR001650 -
Alju07g2163 1471 SMART DUF1086_2 968 1128 IPR009462 GO:0003677|GO:0006338
Alju07g2163 1471 Gene3D - 334 584 IPR038718 -
Alju07g2163 1471 SUPERFAMILY Chromo domain-like 109 219 IPR016197 -
Alju07g2163 1471 Pfam Chromo (CHRromatin Organisation MOdifier) domain 236 284 IPR023780 -
Alju07g2163 1471 Pfam Chromo (CHRromatin Organisation MOdifier) domain 145 199 IPR023780 -
Alju07g2163 1471 Gene3D - 232 285 - -
Alju07g2163 1471 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 577 833 IPR027417 -
Alju07g2163 1471 SMART ultradead3 338 551 IPR014001 -
Alju07g2163 1471 CDD SF2_C_SNF 663 789 - -
Alju07g2163 1471 CDD CD2_tandem 233 282 - -
Alju07g2163 1471 MobiDBLite consensus disorder prediction 959 1009 - -
Alju07g2163 1471 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 668 829 IPR001650 -
Alju07g2163 1471 MobiDBLite consensus disorder prediction 286 321 - -
Alju07g2163 1471 ProSiteProfiles Chromo and chromo shadow domain profile. 235 297 IPR000953 -
Alju07g2163 1471 MobiDBLite consensus disorder prediction 959 980 - -
Alju07g2163 1471 Pfam CHD subfamily II, SANT-like domain 991 1120 IPR009462 GO:0003677|GO:0006338
Alju07g2163 1471 Coils Coil 894 917 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju07g2163 Alju-ChrAlju07 47746156 47763046 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju07g2163 364 839 RAD5 or RAD16-like Gene Family AT1G02670 22.842 4.97e-29 123
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Alju07g2163 SNF2_N 5.8e-66 CL0023
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Alju07g2163 07 47746156 47763046 Alju08g0845 08 6362158 6391445 CCT