Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju07g2079 ATGGGTTGGGGTCACCTGGGAAGAACTGGGCAATCCAACTCGGGTGAGCCGAGTACCAGTGCGGATGCTGCTCCCACCAATACCGAACAATCCGTACCTCGGCGATTCACTCCGGCGGCACAGCCTGAGATCATGAGAGCGGCTGAGAAGGATGATCAGTATGCCTCTTTCGTCTATGAAGCCTGTCGCGATGCCTTCCGTCACCTCTTTGGTACTAGAGTTGCAGTTACCTACCAAAGTGAGACAAAACTATTGGGACAGATGCTTTACTATGTGCTGACAACAGGTTCAGGACAACAGACGCTCGGAGAGGAATACTGTGATATCACTCAGGTTGGAGGACCTTATGGACTTCCTCCTACTCCTGCAAGGCGTGCTCTTTTCATTGTATACCAGACAGCTGTTCCATATATTGCAGAACGCATAAGTTCTAGAATTGCTTCCCGAGGAATTGCACTTGCTGATTCACAATCTGCTGAGATTTATGGTGAAAGTGGTACCATTAGGAGTAGTGAACTTCAAACTTCTGAAGTGAGTGAACTTCCCTCTTCATCAGGGCAATCTCTTACAACTCTGACAAGGTTGAAGGAGAAATTGAGAGGATCTTGGTTGCATGTAGTTCAGAGATGGCCTACGATGCTTCCTATGGTTCGTGAGTTGTTGCAACTGGTTCTTCGTGCTAATCTTATGTTCTTCTATTTTGAAGGCCTCTATTATCATATATCAAAACGTGCTGCAGGAATTCGATATGTCTTCATTGGAAAATCATCAAATCAAAGGCCCAGATACCAAATTCTTGGTGTATTTCTATTGATTCAGCTTTGTATAATTGCTGCTGAAGGGCTACGTCGAAGCAATTTATCTTCAATTGCAAGTTCAGTTCATCAGACATCCTTTGGGACGCATCAGAGATCAGCAGGACGAGGTTTGCCTGTTTTAAATGAAGAGGGTCTTCCAGCATCGTCAGATACAGACAAAGGAAATTGGTTATCTGACGCCACACATTCTGAGTCCCAAGCAACTAGTGGAGCGAGCAAATGCACTCTCTGCCTGAGTAATCGGCAACACCCAACAGCTACTTCCTGTGGCCATGTATTTTGCTGGAACTGTATAACGGAATGGTGCAACGAAAAGCCAGAATGCCCTCTTTGCCGCACCCCCTTAACACACTCAAGTCTAGTGTGCCTGTATCATTCAGACTTCTAG 1206 0.4594 MGWGHLGRTGQSNSGEPSTSADAAPTNTEQSVPRRFTPAAQPEIMRAAEKDDQYASFVYEACRDAFRHLFGTRVAVTYQSETKLLGQMLYYVLTTGSGQQTLGEEYCDITQVGGPYGLPPTPARRALFIVYQTAVPYIAERISSRIASRGIALADSQSAEIYGESGTIRSSELQTSEVSELPSSSGQSLTTLTRLKEKLRGSWLHVVQRWPTMLPMVRELLQLVLRANLMFFYFEGLYYHISKRAAGIRYVFIGKSSNQRPRYQILGVFLLIQLCIIAAEGLRRSNLSSIASSVHQTSFGTHQRSAGRGLPVLNEEGLPASSDTDKGNWLSDATHSESQATSGASKCTLCLSNRQHPTATSCGHVFCWNCITEWCNEKPECPLCRTPLTHSSLVCLYHSDF 401
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju07g2079 401 ProSiteProfiles Zinc finger RING-type profile. 347 385 IPR001841 -
Alju07g2079 401 SUPERFAMILY RING/U-box 346 390 - -
Alju07g2079 401 ProSitePatterns Zinc finger RING-type signature. 362 371 IPR017907 -
Alju07g2079 401 FunFam Peroxisome biogenesis factor 10 322 398 - -
Alju07g2079 401 PANTHER PEROXISOME ASSEMBLY PROTEIN 10 37 399 IPR025654 GO:0005778|GO:0007031|GO:0008270|GO:0016558
Alju07g2079 401 SMART ring_2 347 384 IPR001841 -
Alju07g2079 401 Pfam Zinc finger, C3HC4 type (RING finger) 345 389 - -
Alju07g2079 401 MobiDBLite consensus disorder prediction 7 35 - -
Alju07g2079 401 MobiDBLite consensus disorder prediction 1 39 - -
Alju07g2079 401 Pfam Pex2 / Pex12 amino terminal region 51 284 IPR006845 -
Alju07g2079 401 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 320 398 IPR013083 -
Alju07g2079 401 CDD RING-HC_PEX10 345 396 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju07g2079 Alju-ChrAlju07 46974375 46978509 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju07g2079 342 397 C3H Transcription Factor Family AT4G27470 37.879 8.01e-10 57.0