Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju07g2013 ATGGTGATCGGAGAACTAACTTGTTTTCCCTCAAACTTCAGTTCGCAGTCGAACTTGCCTGATAATCCAACCATCGCATTGCCCGTTGATGGCTTAGCTATCAACTTAAACGGCAATGCCGGTGATTGCGATTATCCACCTTCCATCGATTCCTCCGCCGCTCTCCACCCTTTTCTTTCCAATGATCTCACTCCCATTGATTTGGATTCGCTCTGCGAAGATTTCGACGCTTCTTTTGATGCTTTTTCCTGCGATCATTTCCGCATCTTCGAGTTTAAGATCCGCAAATGCGCGCGTTCCCGGTCACATGACTGGACGGAGTGTCCGTACGCCCATCCCGGCGAGAAGGCTCGCCGGAGAGACCCTCGGAAATTTCACTATTCTGGCACCGCATGTTCCGAATTTCGCAAAGGTCACTGCAAGAAAGGTGACTCGTGCGAGTTTGCTCACGGAGTGTTTGAATGCTGGCTTCACCCATCTCGTTACAGAACCCAATCCTGCAAGGACGGAACAAATTGTCGCCGCCGAGTTTGCTTCTTCGCTCACACACCGGAACAATTGCGGTTCCTTGGTAACGGCTCAGGCGAATCATCGGAGGGATCGCCGATTAATCACGCTTCCTTCGTTTCATCGCCGACATCCGTACTCCAGCCGTCGCCGATCTCTTCATTGGCCGAATCCCCGCCCACATCTCCGGGAAATCCCCGACACGGCTGGAGTGAAATAAGCGCATCAATGCGTAATGCTCAAAGCGATAAATCACCTTCAACTCGAGCTCCTCACTTGCGCGGTGCGCTCGGCTCACCTCATGGTATCCATATGGGTCCCGTATTCGGTTCGCCCCGTGGTTCGAATCTCCGACCCGGATTTCTTAGCCTTCCTACGACTCCGACCCGGATGGTAATGAAATCTGGGCTTCGTAATCTGGACATGTGGGATCAAAGCCACCAAGATGAACCTGCCATGGAAAGGGTTGAGTCGGGAAGAGAACTCAGAGCCAAAATTTACGCCAAGCTCTGTAAGGAGAATTCATTCGGGCGAAGCAACACAAAATTTTCTGGAATGTTCTGA 1071 0.5163 MVIGELTCFPSNFSSQSNLPDNPTIALPVDGLAINLNGNAGDCDYPPSIDSSAALHPFLSNDLTPIDLDSLCEDFDASFDAFSCDHFRIFEFKIRKCARSRSHDWTECPYAHPGEKARRRDPRKFHYSGTACSEFRKGHCKKGDSCEFAHGVFECWLHPSRYRTQSCKDGTNCRRRVCFFAHTPEQLRFLGNGSGESSEGSPINHASFVSSPTSVLQPSPISSLAESPPTSPGNPRHGWSEISASMRNAQSDKSPSTRAPHLRGALGSPHGIHMGPVFGSPRGSNLRPGFLSLPTTPTRMVMKSGLRNLDMWDQSHQDEPAMERVESGRELRAKIYAKLCKENSFGRSNTKFSGMF 356
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju07g2013 356 SMART c3hfinal6 126 152 IPR000571 GO:0046872
Alju07g2013 356 SMART c3hfinal6 161 184 IPR000571 GO:0046872
Alju07g2013 356 Gene3D - 126 189 - -
Alju07g2013 356 ProSiteProfiles Zinc finger C3H1-type profile. 127 153 IPR000571 GO:0046872
Alju07g2013 356 MobiDBLite consensus disorder prediction 190 257 - -
Alju07g2013 356 FunFam Zinc finger CCCH domain-containing protein 66 84 152 - -
Alju07g2013 356 PANTHER UNKEMPT FAMILY MEMBER 50 350 IPR045234 -
Alju07g2013 356 MobiDBLite consensus disorder prediction 190 266 - -
Alju07g2013 356 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 131 151 IPR000571 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju07g2013 Alju-ChrAlju07 46411205 46412275 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju07g2013 76 240 C2H2 Transcription Factor Family AT5G12850 53.939 2.45e-54 188
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Alju07g2013 zf-CCCH 1.1e-05 CL0537