Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju07g2010 ATGGAGGAATATAATAATAATCTGAGCGAAAACAATGGTGGAAGGCCTAATTTCTTGTACTCTTCGACTGGTATTGGCTACGGAGGAAGAAGTAGCAGCGGTGGTGGCTCCAGCGTTGCTCATCATCAGTTACATCCTGCCGTTAATACTTTTCATCTTCACTCTGATTGCTTTCATCATCAATCCGATCAGCCACATCCCACTGTTAAAACCGAGGCCAATACCTCTCACCACCACGCTCAGATTTTTCAGTATCCTCTTCTCAGAGGAAATCTTCACATGACGCACCACCAAGCAGGAGGTGCTGATAGCTCCAATTACGAGGTTGAAGCTATTAAGGCTAAAATCATTGCTCATCCTCACTATTCCAATCTTCTTCAAGCTTACATGGATTGCCAAAAGGTGGGAGCTCCACCGGAAGTGGTGGCGCGTCTGGCTGCTGCGCGTCAGGAGTTTGAGGCACGGCAGCGATCTTCATCGGCTTCCAGGGAATTTTCAAAGGACCCCGAACTGGACCAATTCATGGAAGCTTATTATGACATGCTTGTCAAGTATCGTGAGGAATTGACGAGGCCTATCCAGGAAGCCATGGATTTCATGCGCAGGATTGAAACCCAGCTCAATATGCTTTGCAATGGATCCGTTCGTATCTTCTCTGACGATAAGTGTGAAGGGGTTGGTTCGTCTGAAGAGGATCAAGACAATAGTGGCGGAGAAACAGAATTGCCAGAGATTGATCCCAGAGCTGAAGACCGTGAACTTAAGAACCACTTACTGAGGAAATATAGCGGTTACTTAAGCAGCCTCAAGCAAGAACTGTCCAAGAAAAAGAAGAAAGGAAAACTGCCCAAAGATGCCAGGCAAAAGCTCCTCAGCTGGTGGGAATTACACTACAAATGGCCCTATCCTTCGGAGTCAGAGAAGGTGGCGTTGGCTGAATCAACAGGATTGGACCAGAAGCAAATAAACAACTGGTTCATAAATCAAAGGAAGAGGCACTGGAAGCCATCTGAAGACATGCAATTCATGGTGATGGATGGGCTTCATCCACAGAACGCAACTCTCTATATGGATGGTCACTACATGCCAGATGGTCACTACCGTCTAGGCCCATGA 1116 0.4677 MEEYNNNLSENNGGRPNFLYSSTGIGYGGRSSSGGGSSVAHHQLHPAVNTFHLHSDCFHHQSDQPHPTVKTEANTSHHHAQIFQYPLLRGNLHMTHHQAGGADSSNYEVEAIKAKIIAHPHYSNLLQAYMDCQKVGAPPEVVARLAAARQEFEARQRSSSASREFSKDPELDQFMEAYYDMLVKYREELTRPIQEAMDFMRRIETQLNMLCNGSVRIFSDDKCEGVGSSEEDQDNSGGETELPEIDPRAEDRELKNHLLRKYSGYLSSLKQELSKKKKKGKLPKDARQKLLSWWELHYKWPYPSESEKVALAESTGLDQKQINNWFINQRKRHWKPSEDMQFMVMDGLHPQNATLYMDGHYMPDGHYRLGP 371
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju07g2010 371 FunFam Homeobox protein knotted-1-like 2 278 340 - -
Alju07g2010 371 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 79 343 - -
Alju07g2010 371 SMART HOX_1 275 340 IPR001356 GO:0003677
Alju07g2010 371 Pfam KNOX2 domain 165 211 IPR005541 GO:0003677|GO:0005634
Alju07g2010 371 SUPERFAMILY Homeodomain-like 274 348 IPR009057 -
Alju07g2010 371 Pfam KNOX1 domain 111 153 IPR005540 GO:0003677|GO:0005634
Alju07g2010 371 Pfam ELK domain 253 274 IPR005539 GO:0003677
Alju07g2010 371 SMART KNOX2_2 161 212 IPR005541 GO:0003677|GO:0005634
Alju07g2010 371 SMART ELK_2 253 274 IPR005539 GO:0003677
Alju07g2010 371 ProSiteProfiles 'Homeobox' domain profile. 273 336 IPR001356 GO:0003677
Alju07g2010 371 Pfam Homeobox KN domain 293 332 IPR008422 GO:0003677|GO:0006355
Alju07g2010 371 CDD homeodomain 285 337 IPR001356 GO:0003677
Alju07g2010 371 Gene3D - 278 340 - -
Alju07g2010 371 ProSiteProfiles ELK domain profile. 253 273 IPR005539 GO:0003677
Alju07g2010 371 ProSitePatterns 'Homeobox' domain signature. 311 334 IPR017970 GO:0000981|GO:0006355
Alju07g2010 371 SMART KNOX1_2 110 154 IPR005540 GO:0003677|GO:0005634
Alju07g2010 371 MobiDBLite consensus disorder prediction 222 250 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju07g2010 Alju-ChrAlju07 46376430 46379651 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju07g2010 56 371 Homeobox Transcription Factor Family AT4G08150 72.000 7.84e-157 444
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-KNOX Alju07g2010 KNOX2 5.3e-25 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Alju07g2010 07 46376430 46379651 Alju07g2010 07 46376430 46379651 ECH