Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju07g2009 ATGGGTCTTGCCGATATGTGTAACACAGGCCTCGGCCTTGGTCTTGGCCTTAGTCTTCACCATCATCAGTCTGAGAATTGCTGCACAGAAATCCGACACAAGAAAGAGGATGATCCGTACAAATGTGGCCAGAAGGTTCTGTATCCGTCCCTTACGTTAGGACCGCCTGATGATCAAGAGCCCAATAATCAACAGCTTCTTCCCTCAAAGACTGAATCTGTTCATAATTTCCATGCAATAGCTTCCTCTTCTTCTCCCAGCGCCGCCTCTTCCTTCTCCAACTCCTCCAGCATCAAGAGGGAGAATAAGGACTTTGTGGGCGACGACCTTGATCTGGAAGTAGAGAATAAGGTTAATAATCCTTCCAAGGTATCAGCCCTCGACGTAGACGACGAGGGTAATCCCAGGAAGAAACTTAGGCTCACCAAAGAACAATCTGCTGTTTTAGAGGACAGCTTCAAAAACCACTCCACTCTGAATCCCAAGCAAAAGCAAGAATTGGCAAGGAAGTTAAACCTGCGTGCCCGACAAGTAGAGGTTTGGTTTCAAAACAGGAGAGCCAGGACAAAACTGAAACAAACGGAAGTTGACTGTGAGTTGCTCAAGAAGTGCTGCGAAACGCTGACGGAAGAGAACAAGAGACTGCAAAAGGAGTTGCAAGAACTCAGATCAATGAAAACGACGTCGTCGCAGGGACCCTTGTATATGCAGCTTCCGGCAGCCACCCTCACCTTATGCCCTTCTTGTGAGAGAATCTGCGGAGGCGGAGGCGCCTCCGCCGCCGCCAACGGCTCTCCTGCTACCACCGCCTTCCTTATCGGATCAAAGGCCCATCATCACTTGTACAAAAGCAACCACCCATTCACGCACTCATCCGCAGCTTGCTAG 888 0.4966 MGLADMCNTGLGLGLGLSLHHHQSENCCTEIRHKKEDDPYKCGQKVLYPSLTLGPPDDQEPNNQQLLPSKTESVHNFHAIASSSSPSAASSFSNSSSIKRENKDFVGDDLDLEVENKVNNPSKVSALDVDDEGNPRKKLRLTKEQSAVLEDSFKNHSTLNPKQKQELARKLNLRARQVEVWFQNRRARTKLKQTEVDCELLKKCCETLTEENKRLQKELQELRSMKTTSSQGPLYMQLPAATLTLCPSCERICGGGGASAAANGSPATTAFLIGSKAHHHLYKSNHPFTHSSAAC 295
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju07g2009 295 ProSitePatterns 'Homeobox' domain signature. 167 190 IPR017970 GO:0000981|GO:0006355
Alju07g2009 295 Gene3D - 129 197 - -
Alju07g2009 295 Pfam Homeodomain 136 190 IPR001356 GO:0003677
Alju07g2009 295 Coils Coil 198 228 - -
Alju07g2009 295 FunFam Homeobox-leucine zipper protein 18 120 197 - -
Alju07g2009 295 SUPERFAMILY Homeodomain-like 134 200 IPR009057 -
Alju07g2009 295 Pfam Homeobox associated leucine zipper 192 226 IPR003106 GO:0006355|GO:0043565
Alju07g2009 295 SMART HOX_1 134 196 IPR001356 GO:0003677
Alju07g2009 295 SMART halz 192 238 IPR003106 GO:0006355|GO:0043565
Alju07g2009 295 CDD homeodomain 135 193 IPR001356 GO:0003677
Alju07g2009 295 ProSiteProfiles 'Homeobox' domain profile. 132 192 IPR001356 GO:0003677
Alju07g2009 295 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN HAT14 11 268 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju07g2009 Alju-ChrAlju07 46356756 46357903 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju07g2009 1 295 Homeobox Transcription Factor Family AT4G37790 48.208 6.48e-70 216
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Alju07g2009 Homeodomain 3.7e-17 CL0123