Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju07g2006 ATGGGGAGGGCTCCTTGCTGTGATAAAGCAAACGTGAAGAAAGGACCTTGGTCCCCTGAAGAAGATGCCAAACTCAAGTCCTACATCGAGCAACATGGAACTGGTGGTAACTGGATCGCTTTGCCTCACAAGATCGGGATTCAATATATATATGAATTAGGGCTAAAGAGATGTGGGAAGAGTTGTCGATTGAGGTGGCTAAACTATCTTCGACCAAATATAAAGCATGGGGGTTTTTCTGAAGAAGAAGATAACATTATTTGCAGCCTCTACGTTAGTATTGGAAGCAGGTGGTCGGTGATAGCAGCACAATTGCCAGGAAGGACAGACAACGACATAAAGAATTACTGGAACACAAAACTGAAGAAGAAGCTTCTGGGTAATAAGCACAGTAAAGATCAACAATCACGTAGTAAGAGAAAGCAGGAAGGAGCTAATAGAATCATCACCTCTCCTAATTCCTTATTAGTTCCTGAAAATTCTACAAATACCATTTTTCCACAACCATATTGGCCACTCTTGCCTGTGATACCTCCCTCGCAATACTCATCAAATCAAGACCCATGTTTCAACGATCAAGATTCCATCAAAAAATTGCTCATGAAACTGGGAGGAAGATTTTCAGATGAGGATAATGGGTGGCACAGTGCACAAGGATCCCATGGGTTTGGGAGTGATCACGATAATTATCGCCCTACCCTCGAAGCTTTGAATATTAATCCTAATCTATTCCCAGATACTCCCAGCTGCACACAACCTGTTTGTGAAGAACAGTCAAATATTGCTTCTTCTTCCTCTTGCATGGTAAATAACGGTACGATTGTTAACAACAACAATCACATAGAATTGGTGGCCCAAGAGACAGGAGGACTTGAGGAGATAGTACTATGCAATAGTAGTACTTATACTTATCCACAAAGATTGGATGGACTCGAATTGTTGTTTGGGGAGGACATGATGGTCAATGACAAGATAGCCCCACTTGCAGACCCCAACTCTCTCATGTATCAATCTTTTGTTTCTTCTAATTACCAGGGCATGCCCCAACAATGTGCTTCAGAGTTAAGGTTTAATAACCGCCCATAA 1086 0.419 MGRAPCCDKANVKKGPWSPEEDAKLKSYIEQHGTGGNWIALPHKIGIQYIYELGLKRCGKSCRLRWLNYLRPNIKHGGFSEEEDNIICSLYVSIGSRWSVIAAQLPGRTDNDIKNYWNTKLKKKLLGNKHSKDQQSRSKRKQEGANRIITSPNSLLVPENSTNTIFPQPYWPLLPVIPPSQYSSNQDPCFNDQDSIKKLLMKLGGRFSDEDNGWHSAQGSHGFGSDHDNYRPTLEALNINPNLFPDTPSCTQPVCEEQSNIASSSSCMVNNGTIVNNNNHIELVAQETGGLEEIVLCNSSTYTYPQRLDGLELLFGEDMMVNDKIAPLADPNSLMYQSFVSSNYQGMPQQCASELRFNNRP 361
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju07g2006 361 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 71 125 IPR017930 -
Alju07g2006 361 ProSiteProfiles Myb-like domain profile. 71 121 IPR001005 -
Alju07g2006 361 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 70 IPR017930 -
Alju07g2006 361 CDD SANT 79 119 IPR001005 -
Alju07g2006 361 FunFam Transcription factor RAX3 7 76 - -
Alju07g2006 361 SUPERFAMILY Homeodomain-like 11 117 IPR009057 -
Alju07g2006 361 FunFam Transcription factor MYB36 78 147 - -
Alju07g2006 361 Gene3D - 78 149 - -
Alju07g2006 361 Gene3D - 7 76 - -
Alju07g2006 361 MobiDBLite consensus disorder prediction 127 150 - -
Alju07g2006 361 SMART sant 75 123 IPR001005 -
Alju07g2006 361 SMART sant 13 72 IPR001005 -
Alju07g2006 361 MobiDBLite consensus disorder prediction 128 144 - -
Alju07g2006 361 Pfam Myb-like DNA-binding domain 14 70 IPR001005 -
Alju07g2006 361 Pfam Myb-like DNA-binding domain 77 119 IPR001005 -
Alju07g2006 361 CDD SANT 16 70 IPR001005 -
Alju07g2006 361 ProSiteProfiles Myb-like domain profile. 9 70 IPR001005 -
Alju07g2006 361 PANTHER OS09G0431300 PROTEIN 1 246 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju07g2006 Alju-ChrAlju07 46319623 46321022 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju07g2006 1 234 MYB Transcription Factor Family AT3G49690 55.918 3.61e-78 241
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Alju07g2006 Myb_DNA-binding 2.3e-12 CL0123