Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju07g1997 ATGGGTGGTCATGAAAATGCCATGGGGTTTCAACATGGACAAGAGACAATCCTGAATTGCACGTCATCTGGTTTGAGCACCAATATTTCTGAGATTGCAATTAGCTCTGTGTCTATGGCCAAGCCTCATGTTGTGACTAATCCTTTTCTTGGGTCTTCTTCTTCCACCTGGGATCCTCTTGGTTCCCTGAGTCAGACTCAAACTTTTGGAGGCTCTTCCATGGTTTCTCACAGTGAGTTTGGCAGTTCATCTTACCCTATTGTATTGGAAAATCAGGGAATGAGCAGCACATCTCACCACCTTGTTCCATATGTGTCCGAATCTAATTTCGCTGTTCCTTCCTATGCAAGTGGAAGCTTCTCCGAAATGGTTGGCTCTTTTCCCCAACATGGTGGGTGTTCTGATTTAGCTAATACAAGGTACGGCCCAAGTTATAACCAAAACGAGGAGGCAGCCATGAATAGGGCTTCGTTAAATGCAACTCCTGAAGAAGGAGCCACAGGATCTGCACCTGATGCAAGTAGAAGAAAACGAGGGCTTGATCAGAATCCTACGTTCAGTCCAAACAAGAATGCTGAAGGGGAACCAATGAAGGATTCTTCTGGGAAGAGCTCAGATGGGGCAAAAGAACAAGATGAGAAGAAACAAAAGGTTGAGCAAAACAATCCTGGTGCGGATTTGCGTGGTAAGCAATCATCAAAGCAAGTTAAAGACAACTCTCAAAGTGGAGAAGCTCCCAAAGAGAATTTCATTCATGTGAGGGCTCGAAGAGGCCAAGCTACAAATAGTCATAGCCTTGCAGAAAGGGTAAGAAGAGAGAAGATTAGTGAGCGAATGAGGTTGCTTCAAGAACTTGTTCCAGGATGCAACAAGATAACTGGGAAAGCAGTGATGCTGGATGAGATTATTAACTATGTGCAATCGTTGCAGCAACAGGTTGAGTTTTTGTCAATGAAACTTGCCACCGTGAACCCAGAACTGAATTTTGATGTAGAACGGATCCTATCCAAAGATATTCTTCAGTCACGCATCGCAAATGGGACTATCGGTGGATATGTTATGAACTCCTCTCACCCGTTCCCTAGTGGAAGTTTTCAGGGAACTCTTCCAGGACCAGGCATACCCAACACATCACCACCATTCCCTCCCTTGCTTCAGGGTGTTTTAGAGCATGAGTTCCAAAACTTGTATGGAATGGGATATGATTCCAGTACAGCTCTTGACAATGCAGGACCCAGTGGGAGGTTGAAAACAGAGTTGTAA 1263 0.4473 MGGHENAMGFQHGQETILNCTSSGLSTNISEIAISSVSMAKPHVVTNPFLGSSSSTWDPLGSLSQTQTFGGSSMVSHSEFGSSSYPIVLENQGMSSTSHHLVPYVSESNFAVPSYASGSFSEMVGSFPQHGGCSDLANTRYGPSYNQNEEAAMNRASLNATPEEGATGSAPDASRRKRGLDQNPTFSPNKNAEGEPMKDSSGKSSDGAKEQDEKKQKVEQNNPGADLRGKQSSKQVKDNSQSGEAPKENFIHVRARRGQATNSHSLAERVRREKISERMRLLQELVPGCNKITGKAVMLDEIINYVQSLQQQVEFLSMKLATVNPELNFDVERILSKDILQSRIANGTIGGYVMNSSHPFPSGSFQGTLPGPGIPNTSPPFPPLLQGVLEHEFQNLYGMGYDSSTALDNAGPSGRLKTEL 420
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju07g1997 420 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 257 327 IPR036638 GO:0046983
Alju07g1997 420 MobiDBLite consensus disorder prediction 196 221 - -
Alju07g1997 420 Pfam Helix-loop-helix DNA-binding domain 262 310 IPR011598 GO:0046983
Alju07g1997 420 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 259 309 IPR011598 GO:0046983
Alju07g1997 420 Gene3D - 256 330 IPR036638 GO:0046983
Alju07g1997 420 SMART finulus 265 315 IPR011598 GO:0046983
Alju07g1997 420 FunFam Basic helix-loop-helix transcription factor 256 328 - -
Alju07g1997 420 CDD bHLH_AtBPE_like 249 334 - -
Alju07g1997 420 MobiDBLite consensus disorder prediction 225 246 - -
Alju07g1997 420 PANTHER STEROL REGULATORY ELEMENT-BINDING PROTEIN 151 353 IPR024097 GO:0006355
Alju07g1997 420 MobiDBLite consensus disorder prediction 159 269 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju07g1997 Alju-ChrAlju07 46228092 46230146 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju07g1997 1 420 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G10120 41.570 4.36e-82 254
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Alju07g1997 HLH 4.4e-06 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Alju07g1997 07 46228092 46230146 Alju07g1997 07 46228092 46230146 ECH