Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju07g1992 ATGGATTCTGATCGAGCCAAGCTGTTTGTGGGTGGCATTTCCCGGGACGCTACCGAAGATGTTTTGAAAGACCACTTCTCCAAGTATGGCTCTGTCTTGGGTTCCACAATTTCGTTGGACCGCAACACCAAAATTCCTAGAGGCTTTGGCTTCGTTAGGTTCTCCGACGTTTCCGCGGCTGATAAAGCCCTTCAAGACACGCATATCATACTCGGAAGAACGGTAGAAGTGAAGAAAGCAATACCTAGAAGTGAACATCAACATCAAAACCTACCCCAGAGTAGAGGGACGAGTAACTGTGGTAATTATGACAGTAGTAGTGATCATGTTAGCACCAAAAAGGTTTTTGTAGGAGGCCTATCAGCTGGTATATCTGAGGACGAGTTTAAGAAATATTTCGAGAGATTTGGTAGAATAACGGATGTAGTGGTGATGCAGGACAGTATAACTCACCGGCCTAGGGGATTTGGTTTCATTACTTTTGATTCAGAAGAATCTGTTGAAAGTGTGATGATGAAAAGCTTCCATGACTTGAATGGTAGACAGGTGGAGGTCAAGAGGGCTGTGCCAAAAGACGGGAACAATAATTATGATGGTGGTAATAGAATGAGATACAAGAATGGAAGAGGAGCCCCTAAAGGTCCCCCTCAGTATAGTCCTAGGTACATTCCTCCTGCGGTTGCACATCTTCCCTGCTACGGCGGTGACGGATTGTATTTTTATGGATCTAACATGTATGGTTGCTGGCTCCCTATGGGAGGCTATGGTTGCAATGGATCTGCAGTTCCATTTGATGTTCCTAGGAATTTCTGGTATGGTCCTCCTGTAGCAACTGCTCAGACATGCCAGGTGCCTTATGCTTCTCCAACCCACGCATATGGGACTGTTAGAGGTGTACTCGGTACTGAAACTAGGGGCTACAATGGCATCGTGGGATCTGCAGCAAATTTAAAATTCAACCAGGTTTTCAGTGCCAATGGATTTCTACCAGCTGATGTTACGTCATCATCTCCCAAGATTGAAGAGTTGAAGCAGGAAGTGGAGTCTCTAAGTTTGAAAGAAACCAAAGCTGAAGCTTCTAGTTAA 1086 0.4503 MDSDRAKLFVGGISRDATEDVLKDHFSKYGSVLGSTISLDRNTKIPRGFGFVRFSDVSAADKALQDTHIILGRTVEVKKAIPRSEHQHQNLPQSRGTSNCGNYDSSSDHVSTKKVFVGGLSAGISEDEFKKYFERFGRITDVVVMQDSITHRPRGFGFITFDSEESVESVMMKSFHDLNGRQVEVKRAVPKDGNNNYDGGNRMRYKNGRGAPKGPPQYSPRYIPPAVAHLPCYGGDGLYFYGSNMYGCWLPMGGYGCNGSAVPFDVPRNFWYGPPVATAQTCQVPYASPTHAYGTVRGVLGTETRGYNGIVGSAANLKFNQVFSANGFLPADVTSSSPKIEELKQEVESLSLKETKAEASS 361
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju07g1992 361 Gene3D - 101 218 IPR012677 -
Alju07g1992 361 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 113 190 IPR000504 GO:0003723
Alju07g1992 361 Gene3D - 1 91 IPR012677 -
Alju07g1992 361 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 8 75 IPR000504 GO:0003723
Alju07g1992 361 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 115 173 IPR000504 GO:0003723
Alju07g1992 361 SUPERFAMILY RNA-binding domain, RBD 105 212 IPR035979 GO:0003676
Alju07g1992 361 MobiDBLite consensus disorder prediction 86 105 - -
Alju07g1992 361 MobiDBLite consensus disorder prediction 190 215 - -
Alju07g1992 361 MobiDBLite consensus disorder prediction 82 105 - -
Alju07g1992 361 PANTHER RNA-BINDING PROTEIN MUSASHI HOMOLOG RBP6 1 293 - -
Alju07g1992 361 CDD RRM2_Hrp1p 114 191 - -
Alju07g1992 361 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 6 82 IPR000504 GO:0003723
Alju07g1992 361 FunFam Heterogeneous nuclear ribonucleoprotein A2/B1 108 192 - -
Alju07g1992 361 SMART rrm1_1 7 78 IPR000504 GO:0003723
Alju07g1992 361 SMART rrm1_1 114 186 IPR000504 GO:0003723
Alju07g1992 361 Coils Coil 340 360 - -
Alju07g1992 361 SUPERFAMILY RNA-binding domain, RBD 3 103 IPR035979 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju07g1992 Alju-ChrAlju07 46185859 46187234 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju07g1992 8 251 Eukaryotic Initiation Factors Gene Family AT2G36660 24.111 1.68e-14 72.8