Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju07g1974 ATGGCATTTGCAGGAACAACCCAGAAGTGTATGGCTTGTGACAAAACAGTTTATCTGGTTGACAAACTAACAGCAGATAACCGAGTGTACCATAAAGCTTGCTTCCGATGCCACCACTGCAAAGGAACCCTCAAGCTTAGCAACTACAATTCTTTTGAGGGAGTTCTTTATTGCAAGCCACACTTCGACCAACTTTTCAAAAGAACTGGTAGTCTTGACAAAAGCTTCGAAGGGACACCAAAAATTGCAAAACCAGAAAAACAAATTGACACTGAGAAACCTGCAGTAGCTAAAGCGTCCAGTATGTTTGGTGGTACTAGAGATAAATGCACTGGTTGTCAGAAAACAGTCTACCCAACTGAGAAGGTTACTGTAAATGGAACACCTTACCACAAGAGTTGTTTCAAATGCTGCCATGGAGGGTGTGTTATAAGTCCGTCGAACTACATTGCGCACGAGGGTAAACTCTACTGCAAACACCACCATATCCAACTGATCAAGGAGAAGGGAAATTTAAGCCAGCTTGAAGGTGACCATGACAAGAGTGAAACAAATGAAAAGATCAATGGGGAAGACGTTGCTGCCTAG 588 0.4286 MAFAGTTQKCMACDKTVYLVDKLTADNRVYHKACFRCHHCKGTLKLSNYNSFEGVLYCKPHFDQLFKRTGSLDKSFEGTPKIAKPEKQIDTEKPAVAKASSMFGGTRDKCTGCQKTVYPTEKVTVNGTPYHKSCFKCCHGGCVISPSNYIAHEGKLYCKHHHIQLIKEKGNLSQLEGDHDKSETNEKINGEDVAA 195
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju07g1974 195 ProSitePatterns LIM zinc-binding domain signature. 10 44 IPR001781 -
Alju07g1974 195 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 36 76 - -
Alju07g1974 195 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 102 135 - -
Alju07g1974 195 Pfam LIM domain 110 164 IPR001781 -
Alju07g1974 195 Pfam LIM domain 10 64 IPR001781 -
Alju07g1974 195 MobiDBLite consensus disorder prediction 172 195 - -
Alju07g1974 195 ProSiteProfiles LIM domain profile. 8 68 IPR001781 -
Alju07g1974 195 FunFam LIM domain and actin-binding 1 4 74 - -
Alju07g1974 195 CDD LIM2_SF3 110 170 - -
Alju07g1974 195 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 136 175 - -
Alju07g1974 195 ProSiteProfiles LIM domain profile. 108 168 IPR001781 -
Alju07g1974 195 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 3 35 - -
Alju07g1974 195 CDD LIM1_SF3 6 68 - -
Alju07g1974 195 FunFam LIM domain and actin-binding 1 104 174 - -
Alju07g1974 195 Gene3D Cysteine Rich Protein 4 74 - -
Alju07g1974 195 Gene3D Cysteine Rich Protein 105 174 - -
Alju07g1974 195 PANTHER OS06G0237300 PROTEIN 4 93 - -
Alju07g1974 195 SMART lim_4 109 161 IPR001781 -
Alju07g1974 195 SMART lim_4 9 61 IPR001781 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju07g1974 Alju-ChrAlju07 46008133 46009790 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LIM Alju07g1974 LIM 3.9e-12 CL0167
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Alju07g1974 07 46008133 46009790 Alju08g1007 08 7625748 7627234 CCT
Alju07g1974 07 46008133 46009790 Alju07g1974 07 46008133 46009790 ECH