Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju07g1958 ATGGCTCTGGAAGCTCTTAAGTCCCCCACCGCTGCTCCTCCCTCCTTCCCTTTCGAATTGGACTCCAATCTTCACTCCTTGGAGTCTTGGACTAAGCGCAAGCGTTCCAAGCGTTCCCGTCTCGACCATCCCTCATCATGCACCTCCGAGGAAGAATATCTCGCTCTCTGCCTCATCATGCTCGCTCGCGGTGGCTCCGCCGTCTCCCCCTCCGATCACACCTCCTCCGACCGTCATAGCTCCCCTTCTCCGGATAGTCTTCCCCCTGCTGTATCTGAGTCGGCGCCCCTGTCCGCACCAGATCCAACCACCGCTCCCAAGCTCAGTTACAAATGCTCTGTTTGCGACAAGGCTTTCTCCTCTTACCAGGCTCTTGGAGGACACAAGGCCAGTCACAGAAAGCACACCGCAGCCGCCGCCCCCGTCGAAGATCAATCCACCTCCTCCGCTGTCACGAGCACTTCCGCAAACACCACTACGACTGCATCAGGGGGTAAGTCCCACGAGTGTTCTATCTGCCACAAGTCCTTCCCCACCGGACAAGCTCTTGGAGGTCACAAGCGCTGTCACTACGACGGCGGTGCTGCCGCTGCAGCTGGCGGTGGTAGCAGCGCTGTCACTGCTTCAGAAGGAGTTGGATCCACCCATACCGTTAGCCACAGCCACCGTGACTTCGACCTGAACCTTCCCGCTTTGCCTGACTTCTCTGCCAAATTCTTCACTCATGGCGAAGACGAAGTGGAGAGCCCTTTGCCGGTGAAGAGGCCGCGTCTTTTGATGGCACCGAAAACCGAAGAAGATCACTGA 807 0.5787 MALEALKSPTAAPPSFPFELDSNLHSLESWTKRKRSKRSRLDHPSSCTSEEEYLALCLIMLARGGSAVSPSDHTSSDRHSSPSPDSLPPAVSESAPLSAPDPTTAPKLSYKCSVCDKAFSSYQALGGHKASHRKHTAAAAPVEDQSTSSAVTSTSANTTTTASGGKSHECSICHKSFPTGQALGGHKRCHYDGGAAAAAGGGSSAVTASEGVGSTHTVSHSHRDFDLNLPALPDFSAKFFTHGEDEVESPLPVKRPRLLMAPKTEEDH 268
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju07g1958 268 MobiDBLite consensus disorder prediction 132 167 - -
Alju07g1958 268 Pfam C2H2-type zinc finger 110 134 - -
Alju07g1958 268 Pfam C2H2-type zinc finger 168 192 - -
Alju07g1958 268 SUPERFAMILY beta-beta-alpha zinc fingers 110 190 IPR036236 -
Alju07g1958 268 ProSitePatterns Zinc finger C2H2 type domain signature. 112 132 IPR013087 -
Alju07g1958 268 Gene3D Classic Zinc Finger 108 190 - -
Alju07g1958 268 MobiDBLite consensus disorder prediction 30 49 - -
Alju07g1958 268 MobiDBLite consensus disorder prediction 141 167 - -
Alju07g1958 268 MobiDBLite consensus disorder prediction 68 88 - -
Alju07g1958 268 PANTHER C2H2 TYPE ZINC FINGER TRANSCRIPTION FACTOR FAMILY-RELATED 32 233 IPR044653 GO:0003700
Alju07g1958 268 MobiDBLite consensus disorder prediction 1 21 - -
Alju07g1958 268 SMART c2h2final6 168 190 IPR013087 -
Alju07g1958 268 SMART c2h2final6 110 132 IPR013087 -
Alju07g1958 268 MobiDBLite consensus disorder prediction 244 268 - -
Alju07g1958 268 ProSiteProfiles Zinc finger C2H2 type domain profile. 168 190 IPR013087 -
Alju07g1958 268 MobiDBLite consensus disorder prediction 66 103 - -
Alju07g1958 268 ProSiteProfiles Zinc finger C2H2 type domain profile. 110 137 IPR013087 -
Alju07g1958 268 ProSitePatterns Zinc finger C2H2 type domain signature. 170 190 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju07g1958 Alju-ChrAlju07 45835372 45836178 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju07g1958 1 258 C2H2 Transcription Factor Family AT1G27730 49.421 1.91e-68 209
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Alju07g1958 zf-C2H2_6 1.7e-12 CL0361