Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju07g1907 ATGCAAGGTCAGAGGGGTGCAATTGGTTCCTTTCCTGAAACCTTAGAATTCAATTGTGGATCCACATCAAGTAATCCTACTGTGGATCAACCAATTTGCTGGAATAATATGCGGAATCCTGCTGATAATGATAGTGATATATCAGAGTATTTACTTCCTTTGAGTGATATGAACCCACCGTATATGAATCCTATAAGCCATGAATGGCAGAATTCGGGTGGATGGAGCTTAGGTGAGCCCAGTTCTAGTAACACCCAGAGTGAAATCAACAATAACCAGCAGAAAAGAGAGCTCGGATGGACATCTCCAATCAGTGCTAATGCGGCAGCTGGTCCAAGAGCAGAAGAAAGGCACTTCGAACCAACTATTGTTCTTTCGGCTGACAATGTCAATTCCAGTCCTATTTATATGCACAACTCCAATTCTCACATGTCACCGAATCTCAGCTTAAATACTGGCTTGTTTGCAGATAGTGGTGGTGATAACAGCCAGCATCTGGAACACCCTAACTTGCACAAATCTAGTGGATCAGTAAATGAGCGTGTTCTACCTGGCATTGTTGCTGGTCCTATTCCTCCTCCTCCTCCTCCTGGAAATAACAGCTTTGTGCCAGAAGGCACTGATGCTAGGCCTGGATGTTCTGTAGATGCGCACCGTGCATCTTGTAAAAGAAAGGCCATTGAAGAAAATGTTGGACCATCTTTGGATGGTGGAAGTTCTAGTTCTAGTCAGCATACAGAAAGTAGTGCTTGGAACACTCTTCCAACTCAGGATAATGCTGGGAGCTGTTTAAGTAGATCTGGTTCATCTGAACAGGTAAATGCTAGACTTGGGCTGGGAATGGGGGATGAAGCCCCTGAAAACCTTCCTGATTCAAATGATGCAGGGAGCACAGAAAGCTTCCGCAGGAATCTCCGTTTGAGGATAAGTCCTTCAAGCCAACAAAATTCAATTCCTCCCCCTGCGTTCTCTTCTGGGAGTGTGATTAGGCATTCTAGTATGTCAACCTCTTCAATGTCACAAAGGTTCCCGCCTGTTGATAACCCCTTGGCCTTGAGGGCAGCACCGATGGTAGATAATATAATTCCTCAAAGCCAGCCCCTTGTGATCCATGTTCCTACTTTACCAAGGAATGTGCAATCATTAAGATGGAATGGTAGTTCTAGCTCAAGCAACAGCCAATCATCAAGCCCAATCCTTTGTGCAGATAGGGATAACCAGCCACGGGAAGAATCAAGCTCAAGAAGTGTTTCTAGAAACATTTTTGATCGCCCTGTGTTTGTACCTGCAACTGATTTAAGAAATCTAGTTCGAAATCCAACGGTTAGAGCTTCAGGTAGTGCAAGTTTAAGCATGTCAGGAAATGTTGCTTCTTCTTCACGGGCCGGATCAAATTCGGCTATCAACCAGTCATCTACCTCAACGTGGGTTTCTCGTCCTAATCCTCCACAGTATCCACGTAGATTGTCCGAATATGTCCGTCGATCTTTGTTTTCTCCTCCTTCTGAGACCACTGGAGGTCAAAATCCAAGCAATAATTATTCTTCTTTGCGCTCTGGTCCTACTGCTTCATCTGAAGCAAGGGTGCCATCATCTGGGGCTGGTATCCAAGGACATCATCAATCACACCCAAGATCTTTGTGGATGGAAAGGCAAGGTGATGCTGAATTTGGAATTCCTTATTCATTGCGAAATTTGGCTGCTGCTGGTGAAGGAAGTAGTAGTAGACTAGTATCTGAGCTTCGTAATGTTTTGGGCCTCATGCGAAGGGGTGGAGGCCTGCGATTTGAGGATGTTATGATTCTTGACCAATCAGTCTTTTCTGGAATGGCTGATATTCATGATCGACACAGGGATATGCGCCTTGATGTGGATAACATGTCTTACGAGGAGCTGCTTGCTCTGGAAGAGCGAATTGGAAATGTGAGTACTGGATTGAGTGAAGAAACCGTAATGAAACTTTTGAAACATAAGAAGTATTCAATTGAAACAGGATCTAAGCTTGAGGCAGAACCGTGCTGTGTCTGTCAGGAGGAGTACAACGACGGAGTAGATATTGGAACTCTTGATTGTGGGCATGATTTCCACAAAGACTGTATCAAACAGTGGCTAATGCATAAGAATCTTTGCCCCATTTGTAAGACTACAGGCTTGTCGTCATGA 2163 0.4448 MQGQRGAIGSFPETLEFNCGSTSSNPTVDQPICWNNMRNPADNDSDISEYLLPLSDMNPPYMNPISHEWQNSGGWSLGEPSSSNTQSEINNNQQKRELGWTSPISANAAAGPRAEERHFEPTIVLSADNVNSSPIYMHNSNSHMSPNLSLNTGLFADSGGDNSQHLEHPNLHKSSGSVNERVLPGIVAGPIPPPPPPGNNSFVPEGTDARPGCSVDAHRASCKRKAIEENVGPSLDGGSSSSSQHTESSAWNTLPTQDNAGSCLSRSGSSEQVNARLGLGMGDEAPENLPDSNDAGSTESFRRNLRLRISPSSQQNSIPPPAFSSGSVIRHSSMSTSSMSQRFPPVDNPLALRAAPMVDNIIPQSQPLVIHVPTLPRNVQSLRWNGSSSSSNSQSSSPILCADRDNQPREESSSRSVSRNIFDRPVFVPATDLRNLVRNPTVRASGSASLSMSGNVASSSRAGSNSAINQSSTSTWVSRPNPPQYPRRLSEYVRRSLFSPPSETTGGQNPSNNYSSLRSGPTASSEARVPSSGAGIQGHHQSHPRSLWMERQGDAEFGIPYSLRNLAAAGEGSSSRLVSELRNVLGLMRRGGGLRFEDVMILDQSVFSGMADIHDRHRDMRLDVDNMSYEELLALEERIGNVSTGLSEETVMKLLKHKKYSIETGSKLEAEPCCVCQEEYNDGVDIGTLDCGHDFHKDCIKQWLMHKNLCPICKTTGLSS 720
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju07g1907 720 MobiDBLite consensus disorder prediction 228 270 - -
Alju07g1907 720 SUPERFAMILY RING/U-box 672 716 - -
Alju07g1907 720 MobiDBLite consensus disorder prediction 383 402 - -
Alju07g1907 720 MobiDBLite consensus disorder prediction 190 216 - -
Alju07g1907 720 MobiDBLite consensus disorder prediction 234 270 - -
Alju07g1907 720 FunFam E3 ubiquitin-protein ligase MBR2 641 718 - -
Alju07g1907 720 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 636 717 IPR013083 -
Alju07g1907 720 MobiDBLite consensus disorder prediction 309 343 - -
Alju07g1907 720 MobiDBLite consensus disorder prediction 444 544 - -
Alju07g1907 720 MobiDBLite consensus disorder prediction 497 539 - -
Alju07g1907 720 ProSiteProfiles Zinc finger RING-type profile. 673 714 IPR001841 -
Alju07g1907 720 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF165 218 719 IPR045191 GO:0061630
Alju07g1907 720 MobiDBLite consensus disorder prediction 72 102 - -
Alju07g1907 720 MobiDBLite consensus disorder prediction 72 101 - -
Alju07g1907 720 MobiDBLite consensus disorder prediction 444 481 - -
Alju07g1907 720 Pfam Ring finger domain 673 714 IPR001841 -
Alju07g1907 720 SMART ring_2 673 713 IPR001841 -
Alju07g1907 720 MobiDBLite consensus disorder prediction 383 417 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju07g1907 Alju-ChrAlju07 45332783 45336351 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju07g1907 220 720 C3H Transcription Factor Family AT2G15530 38.815 2.31e-83 277
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Alju07g1907 07 45332783 45336351 Alju08g1061 08 7988203 7991470 CCT
Alju07g1907 07 45332783 45336351 Alju07g1907 07 45332783 45336351 ECH