Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju07g1906 ATGGCCGATATGTACGGTACTCCTCCCTCTCTGCTCACCGCCTCCGCCATGCCCTCTGATTCCGACGATTTCTCCACCTTCTTCTCCCACCTCCTCCATAACTCGCCCTCCTCTTCCATCCTTTCCAAACCCAAAACCTCACCGCCTCCGTGGCTCACTCCGCTGGTGGGGACCGCCGGGTTAGGTCAATCGAGCTCGGACTCACCTCACAATAATGGCAAACCCGTTGGTTATTCCGGTGCAGTTTCTGATTCTTTCGAATTTTCTGATCCCTATGCTTACGTTCCGGCTGAGTTGAAAGAGGCTGCTGGAAATGAGTTGTTTCCCACTGGTATCGACGATTCTGATGAAAATACTACTTCCTTCAAAGAACATAGGATTTCGCCGGAGATTGATCCCGGCGATTTCATTTGGGCCCTCGAGAAGAATGGTGAGTCGTCGCAGACAAAGCGAGTCCCAGGACGTACTTCCTCAAAGAGGAGCAGAGCCGCGGAGGTTCATAATATGTCTGAAAAGAGGAGGAGGAGTAGGATTAACGAGAAAATGAAGGCCTTACAGAACTTAATTCCAAATTCTAACAAGACGGATAAAGCTTCAATGCTGGACGAGGCAATCGAATATTTGAAGCAACTTCAGTTTCAAGTGCAAATGTTAGTGATGAGGAACGGTTTGAGCTTGCATCCAATGTGTTTACCAGGAGGACTGCAATCTATGACACTGCCTCAGACAGGGTTGAATTTTGACGACTCCGATGTATATCACAATTCTTCTCGTGGAATTGCCTCATCGTCCCTGAATGCTGATGAATGCTTGGTGCCCCCACCGAGACTTCCAAAGCACTGCGGCATCTCTGATCAACCTGTGATCATCCCCTCCATGGCCAACCCAGATACCTCATCAGGTTTCAGATTTCACATTGGACAATTCGACCCTTCTACGTCTTCCAAGATTATTGTGTGTAACGTGAAGGATGCACTCTCTGATGGAGCACCACAACTCCATTTGGACGCCACAAAGATTGAAAAGAGCGCGTCTTCAGATGTCTCCTAA 1050 0.4857 MADMYGTPPSLLTASAMPSDSDDFSTFFSHLLHNSPSSSILSKPKTSPPPWLTPLVGTAGLGQSSSDSPHNNGKPVGYSGAVSDSFEFSDPYAYVPAELKEAAGNELFPTGIDDSDENTTSFKEHRISPEIDPGDFIWALEKNGESSQTKRVPGRTSSKRSRAAEVHNMSEKRRRSRINEKMKALQNLIPNSNKTDKASMLDEAIEYLKQLQFQVQMLVMRNGLSLHPMCLPGGLQSMTLPQTGLNFDDSDVYHNSSRGIASSSLNADECLVPPPRLPKHCGISDQPVIIPSMANPDTSSGFRFHIGQFDPSTSSKIIVCNVKDALSDGAPQLHLDATKIEKSASSDVS 349
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju07g1906 349 PANTHER TRANSCRIPTION FACTOR PIF1-RELATED 17 303 IPR031066 -
Alju07g1906 349 Pfam Helix-loop-helix DNA-binding domain 166 212 IPR011598 GO:0046983
Alju07g1906 349 FunFam Basic helix-loop-helix transcription factor 157 220 - -
Alju07g1906 349 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 159 222 IPR036638 GO:0046983
Alju07g1906 349 Gene3D - 157 220 IPR036638 GO:0046983
Alju07g1906 349 MobiDBLite consensus disorder prediction 143 176 - -
Alju07g1906 349 Coils Coil 168 188 - -
Alju07g1906 349 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 162 211 IPR011598 GO:0046983
Alju07g1906 349 MobiDBLite consensus disorder prediction 58 73 - -
Alju07g1906 349 MobiDBLite consensus disorder prediction 35 80 - -
Alju07g1906 349 CDD bHLH_AtPIF_like 162 224 IPR047265 -
Alju07g1906 349 SMART finulus 168 217 IPR011598 GO:0046983
Alju07g1906 349 MobiDBLite consensus disorder prediction 158 176 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju07g1906 Alju-ChrAlju07 45319243 45321551 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju07g1906 162 233 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G36930 90.278 2.58e-39 141
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Alju07g1906 HLH 1.7e-14 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Alju07g1906 07 45319243 45321551 Alju07g1906 07 45319243 45321551 ECH