Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju07g1853 ATGGAACAGAGTATCCTATGCAAATACACTGTCCACGAAAGTGTCACCAAGAAGTACGCTAAGCCGGTGGCCGCCAACAAGTCTTCCGATGTTCACTGTCCCTTTGAGCCCAGAGTGGTACGGATATCTGTCACCGATCCAGACGCCACTGATTCCTCCAGCGATGAGGAAGGAGAGTTCTGCTTCAGTCGTCAGAGAGTGAAGCGTTATGTGAATCAGGTCAACATCGAGCCGAGCTGTAAGAGCGCGGTGACTTCCAATCCGCGAAAGAGGCCCGCCGGAGAAACTCAAGCCTGCCGGCGGCCGGTGAAGGTTTCTTCTAGTAATAACGCAAGGAAGTTCAGGGGAGTACGACAAAGACCCTGGGGGAAATGGGCGGCGGAGATTCGAGATCCCGCTCGTCGTGTACGTGTGTGGTTGGGCACCTTCGACACAGCAGAGGAAGCAGCCATGGTTTATGATAATGCAGCGATTAAGATACGCGGACCAGACGCGTTGACAAACTTCGTGACCCCACCGCCGAGGGAAAAGCCGGAAGAAGCAGAAGTGGCGGTGAAGCCGGAAATCAATGTGGTGGTGAAGTCAGAAGCGTCGGGATCGGGCTACGATTCTGGCGACGAATCACATCGTCTGCCATCTCCCACCTCCGTGCTGCAATTCAGAAGCAACTGCAGCGAAGAGATCGAACCCCAGAAGGAAAGTGAACCGGAGAAAGAAAGTGAGGCGGAGACAGAGGCGGCAGAAGGGGAAGATATGTTCCGGGAGTGTGAAGGCGAGACGAGTCAGTCAGGCGAGAAGGCGGACTTGTTCGGGTTGGACATGCCGAAGGAGGATTACTTCGGGTTCGACATGCCAAATTGGGAGCAGGTGTTCGATTTCTCAACGCCAGAACCAGAATACTCATTACTGTTCGAAGAACCTCCTCCGTTCCTGGGGGAGACGGGGGAGGCGGCGATGTTGGCAGAGGAAGATTTCAAAGTGGAGGATTTCTTGGTTGGGGATTCAGAGTTGGAGGTGGAGAAATCATTCTCGCCCTCGAACGTGTGCCAAATGGACGATTACTTCCAAGACATATTGTCTGGTTCGGAGCCACTGGTGGTGCTGTGA 1107 0.5402 MEQSILCKYTVHESVTKKYAKPVAANKSSDVHCPFEPRVVRISVTDPDATDSSSDEEGEFCFSRQRVKRYVNQVNIEPSCKSAVTSNPRKRPAGETQACRRPVKVSSSNNARKFRGVRQRPWGKWAAEIRDPARRVRVWLGTFDTAEEAAMVYDNAAIKIRGPDALTNFVTPPPREKPEEAEVAVKPEINVVVKSEASGSGYDSGDESHRLPSPTSVLQFRSNCSEEIEPQKESEPEKESEAETEAAEGEDMFRECEGETSQSGEKADLFGLDMPKEDYFGFDMPNWEQVFDFSTPEPEYSLLFEEPPPFLGETGEAAMLAEEDFKVEDFLVGDSELEVEKSFSPSNVCQMDDYFQDILSGSEPLVVL 368
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju07g1853 368 MobiDBLite consensus disorder prediction 82 106 - -
Alju07g1853 368 PRINTS Ethylene responsive element binding protein signature 136 152 IPR001471 GO:0003700|GO:0006355
Alju07g1853 368 PRINTS Ethylene responsive element binding protein signature 114 125 IPR001471 GO:0003700|GO:0006355
Alju07g1853 368 SUPERFAMILY DNA-binding domain 113 170 IPR016177 GO:0003677
Alju07g1853 368 ProSiteProfiles AP2/ERF domain profile. 113 170 IPR001471 GO:0003700|GO:0006355
Alju07g1853 368 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 37 262 - -
Alju07g1853 368 Gene3D AP2/ERF domain 112 171 IPR036955 GO:0003700|GO:0006355
Alju07g1853 368 MobiDBLite consensus disorder prediction 247 262 - -
Alju07g1853 368 MobiDBLite consensus disorder prediction 209 225 - -
Alju07g1853 368 Pfam AP2 domain 113 162 IPR001471 GO:0003700|GO:0006355
Alju07g1853 368 SMART rav1_2 113 176 IPR001471 GO:0003700|GO:0006355
Alju07g1853 368 CDD AP2 113 169 IPR001471 GO:0003700|GO:0006355
Alju07g1853 368 PIRSF PTI6 4 226 IPR017392 GO:0003700
Alju07g1853 368 PIRSF PTI6 221 310 IPR017392 GO:0003700
Alju07g1853 368 FunFam Ethylene-responsive transcription factor 2 112 171 - -
Alju07g1853 368 MobiDBLite consensus disorder prediction 197 266 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju07g1853 Alju-ChrAlju07 44862360 44863466 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju07g1853 7 292 AP2-EREBP Transcription Factor Family AT4G27950 45.485 4.31e-64 206
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Alju07g1853 AP2 4.4e-14 CL0081