Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju07g1848 ATGGACGACGGCTTCTCTGATATTTTCGAAGACAGAGACTTGGACTTGGGTGGAGACGACCTGCTTGCTATTTTGGACTCCCTCGAGGACTTCACCAATTTCCCTCCCGTTGAAGAATCCCTTGCTGTTACCGCAAAAGAGAATAATAACTATGAAACCACAAGCCCTCTCCAATCTGATTCACTTATTACCACAACCAGAAGCAACAAAAGACAGAAGCTTTCAGAGTCATCATCTGAAGAACCTAAGATATCTCATATCACTGTGGAGCGCAACCGAAGAAAGCAAATGAACGAGCACTTGTCCGTCTTGAGGTCCCTCATGCCTTGCTTCTATGTCAAGCGAGGTGATCAAGCATCAATAATAGGAGGAGTGGTAGAGTACATCAACGAGTTGCAGCAACTTCTGCAATCCCTAGAGGCCAAGAAACAGAGAAAGGTGTATAATGAAGTTCTGAGCCCTAGATTGGTGTCAAGTCCGAGGCTTTCGCCGAGAGTGATGCCGCCGGTGAGCCCTAGGCTAAACCTACCCATTAGCCCAGGCACACCACAGCCAGGTAGCCCCTACAAGCCCCAACAACCCAGACTGTCCACCTCTCTAGAACCTTCTCCCACATCTTCTGCTTCTTCCTCCATCAACGACAATATCAACGACCTCGTCGCTAACTGCAAGTCTTCCATCGCCGACGTCGAGGTTAAGTTCTCAGGGCCCCACGTACTCTTGAAAACCCTATCTCCTCCAATCCCTGGACAAGCGTTAAAAATCATCTCCGCCCTTGAAGATCTGGCCCTCGAAATCCTTCAGGTCAACATCACCACTGCTGAACAAGGCGTGCTTAACTCATTCACCATCAAGATTGGAGTAGAATGTCAGCTCAGTGCTGAGGATCTGGCTCAACAGGTCCAGCAAACTTTCTCGCATCATGGGATTCCCTCGTGA 939 0.4888 MDDGFSDIFEDRDLDLGGDDLLAILDSLEDFTNFPPVEESLAVTAKENNNYETTSPLQSDSLITTTRSNKRQKLSESSSEEPKISHITVERNRRKQMNEHLSVLRSLMPCFYVKRGDQASIIGGVVEYINELQQLLQSLEAKKQRKVYNEVLSPRLVSSPRLSPRVMPPVSPRLNLPISPGTPQPGSPYKPQQPRLSTSLEPSPTSSASSSINDNINDLVANCKSSIADVEVKFSGPHVLLKTLSPPIPGQALKIISALEDLALEILQVNITTAEQGVLNSFTIKIGVECQLSAEDLAQQVQQTFSHHGIPS 312
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju07g1848 312 PANTHER TRANSCRIPTION FACTOR FAMA 18 305 IPR044283 GO:0003700|GO:0010052
Alju07g1848 312 MobiDBLite consensus disorder prediction 51 85 - -
Alju07g1848 312 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 80 154 IPR036638 GO:0046983
Alju07g1848 312 CDD bHLH_AtFAMA_like 84 155 - -
Alju07g1848 312 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 81 132 IPR011598 GO:0046983
Alju07g1848 312 SMART finulus 87 138 IPR011598 GO:0046983
Alju07g1848 312 MobiDBLite consensus disorder prediction 51 72 - -
Alju07g1848 312 Pfam Helix-loop-helix DNA-binding domain 83 133 IPR011598 GO:0046983
Alju07g1848 312 Coils Coil 125 149 - -
Alju07g1848 312 Gene3D - 70 147 IPR036638 GO:0046983
Alju07g1848 312 MobiDBLite consensus disorder prediction 165 190 - -
Alju07g1848 312 MobiDBLite consensus disorder prediction 159 212 - -
Alju07g1848 312 MobiDBLite consensus disorder prediction 191 212 - -
Alju07g1848 312 FunFam Transcription factor SPEECHLESS 61 147 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju07g1848 Alju-ChrAlju07 44815874 44817833 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju07g1848 13 286 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G53210 50.760 2.66e-82 251
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Alju07g1848 HLH 3.4e-10 No_clan