Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju07g1770 ATGGTGGACGATTCAATTGATCACGCCTCACTCATTCCGGCATCTGAATTACTTTTTCATACTGTCCTTAGTATATCTGATATCACCAAAGCAGCCAATCAGATTCTGATTCAGAAGGATAATTTCAGAAAGTTCTCAACTTACTTGGGGAAGGTCTCATTAATTTTAAAACGACTATCAAAAGAAGACATACACCATGCAGAGAGCTTGAAAAATTCCCTTGGTGTCCTCAACCAAGAAGTTAAAGCTGCTAAACAGCTGGTTTCTGAGTGCAACTCCAAGAGTAAGATTTATCTTTTCATCAGTTCCGGAAAGATTGCTGAGAATTTGGAGTGTTGTACCAAAAACATAAGCCGAGCTGTGAGCCTCATCCCTCTCAGCTCTTTGGATGTTTCTTCTGGTCTAAGTAAACAAATAAGTGAGCTATGCCAGAACATGCTAGATGATGAGTATAAAGCAGCTGCAGCAGAAGAGGAAATTCTGGAAAAACTTGAGTTAGCAATACAAGAAGGAAATGCTGAGCGCTCTAATGCGAATCAGTTGCTGGCTCGTATTGTGGATGTCATTGGGATCTCAACTGAGCATGCTGTTATAAAGAGAGAATTTAAAGAGTTGAAAAGTGACATGCAAATTTCTGAGCCAAGAAGAGATATAGCAGAAGCTCTACATATGGAGCAGATTGTTGGATTGCTCGAAAAAGCTGATTCCGTTACTTCATCACAAGAGAAGGAGAGGAAGTATTTTGAAAAGCGAAATTCCCTGGGACGACAGCTGTTGGAGCCGTTACATTCGTTTTACTGTCCAATCTCACTTGATATCATGGAAGATCCTGTGGAGACTTCTTCTGGCAAGACATTTGAGAGAAAGGCAATAGAGAAGTGGCTTGCAGCAGGGAATAAGAACTGCCCCTTAACCATGTTGCCTCTGGATACTTCAAAATTAAGACCTAATAAGACTCTTCGACAGTCTATTCAAGAATGGAAAGATAGGAACACCATGATTACCCTTTCTACTCTCAAGTCCAAGCTTGAGAGCGATGATGAAGCGGAAATACTTCAATCCTTGGAAAAATTGCAGGGCCTCTGCTCGGGAAGACAGATGCATCGAGAATGGGTAAAAATGGAGAATTACATCACAACTCTGATCAAGCTCCTCGGTGGTAGGAATAGAGAAATAAGGAAGCGTGTTCTCTCCACCCTGTCTTTGCTTGCAAAGGACAATGAAGAGAACAAGGAAGATATTGCTGAAGTTGACCATGCACTAGAATCAATTGTTCGCTCACTGGCACGTCGAATAGAGGAAAGCAAGTTGGCAGTGGAGTTGCTGTTAGAATTGTCTAGAAGTACTACAGTGCGTGATCTCATAGGAGATGTTCAAGGAAGCATACTCCTCCTGGTCACAATGTTAAGCAGTGATGATGCTGAAGCAGCCCATAATGCACGTGAGCTTCTGGATAACCTCTCTTTCCTTAACCACAATGTTATAGAGATGGCAAAGGCAAATTATCTCAAGCCTTTGCTGCAGAACCTTTCCTCAGGAACAGAAAATGTGAAGATAATCATGACCAGAACTTTATCAGAGATTGAATTGACTGACCATAATAAAGCATCAATAGTCAGAGATGGGGCACTGCAGCCACTTCTTCAGTTGCTCTCTAATCCTGACGTGCAAATCAAGGAAGTAGCTGTGAAAGCTCTTCTGCAGCTTTCAAGCTTGCCAGAAAATGGCCTACAGATGATTAGGGAGGGTGTTGCTCAATCTCTATTCGAGCTGCTATATCGTCACAGTTTACAATCAACCGCTCTGCGGGAACAGGCAACTAACACTATGATGCATCTTGCCATGTCAACCACTCACCAACGAGCTGATGAAGTTCAGGTTTCATTGTTAGATTCTGAGGATGACGTATTTAAATTCTTCTCACTTGTTTCCTTCACCGGACCTGATATACAAAGCAAGATTCTGAAAACTTTCCTGGCAATGTGCCAGTCTCCCTCTGGTCTCACCATCAGAGAAAGGTTACGACAGCTCTCAGCTGTCCAAGTATTAGTTCAATTGTTAGAGCTCAATAACCAAACTGTGCGGGCAAACGCGGTGAAGCTGTTCTATTACATGACAGAGGGCGGTGATTGCAGAAACTTTACATCACATATAACTGAAAGATGCATCAATGTCTTGCTCACCATCATCAAAACCACTGAAGATGAAGAAGAAATGGTTTCTGCTATGGGTATCATCTCAAGACTTCCAAGGGAACCACAAATAACCCGGTGGCTTTTAGATTCTGGGGCAGTTAAAATTATCTTGGATTGTCTTTCGGACCGACATAAGCATGCCTCGCACAAACGGCAGGTCATCGAGAACTCTGTTCAAGCTCTTTGCCGTTTTACTGTCTCGACAAACCTAGAGTGGCAGAAGGCAGTAGCTCAAGAAGGCATCATCCCTATCCTGGTGCAATTGCTGGAATCTGGGACACCTCTTTCGAAACAAAATGCAGCAATTTCAATAAAGCAGTTTTCAGAAAGCTCATGGCTCTTAAGCAGGCCGATAAAAAAGCCGGGTATATTCAAATTATGCTTTGTACCTCATGAAACCGGCTGCCCGGCACACCTAGGCACCTGCACAGTTGAGTCTTCATTCTGTATCATAGAGGCTGATGCTTTGAAGCCCCTTGTGAGGTTGCTTAGAGAGCAAGAAATTGGAACATGCGAAGCTTCCTTAGATGCACTTTTAACTTTGATTCATGGTGGAACACCACAAGGTGGTGGGTGTAAGGTACTTGCAGATGCAGATGCTATTACTCCACTGATAAATTTATTGAGTCTTCAGTCTGACAGATTGGAAGAAAAAATTCTTGTAGCTTTAGAGAAAATTTTTCAAGTGGATGAAATAAAGAACAAGTATAAAGCTTCAGCCACAATGCCTTTGGTGGACATGACCCAGAGGAAAGATAGTCATCGCTTGAGAAGTCTTGCTGCCAGAGTCCTTGCACAATTGGGTGTGCTTGAGAAACAGTCTTCTTATTTTTAA 3030 0.4248 MVDDSIDHASLIPASELLFHTVLSISDITKAANQILIQKDNFRKFSTYLGKVSLILKRLSKEDIHHAESLKNSLGVLNQEVKAAKQLVSECNSKSKIYLFISSGKIAENLECCTKNISRAVSLIPLSSLDVSSGLSKQISELCQNMLDDEYKAAAAEEEILEKLELAIQEGNAERSNANQLLARIVDVIGISTEHAVIKREFKELKSDMQISEPRRDIAEALHMEQIVGLLEKADSVTSSQEKERKYFEKRNSLGRQLLEPLHSFYCPISLDIMEDPVETSSGKTFERKAIEKWLAAGNKNCPLTMLPLDTSKLRPNKTLRQSIQEWKDRNTMITLSTLKSKLESDDEAEILQSLEKLQGLCSGRQMHREWVKMENYITTLIKLLGGRNREIRKRVLSTLSLLAKDNEENKEDIAEVDHALESIVRSLARRIEESKLAVELLLELSRSTTVRDLIGDVQGSILLLVTMLSSDDAEAAHNARELLDNLSFLNHNVIEMAKANYLKPLLQNLSSGTENVKIIMTRTLSEIELTDHNKASIVRDGALQPLLQLLSNPDVQIKEVAVKALLQLSSLPENGLQMIREGVAQSLFELLYRHSLQSTALREQATNTMMHLAMSTTHQRADEVQVSLLDSEDDVFKFFSLVSFTGPDIQSKILKTFLAMCQSPSGLTIRERLRQLSAVQVLVQLLELNNQTVRANAVKLFYYMTEGGDCRNFTSHITERCINVLLTIIKTTEDEEEMVSAMGIISRLPREPQITRWLLDSGAVKIILDCLSDRHKHASHKRQVIENSVQALCRFTVSTNLEWQKAVAQEGIIPILVQLLESGTPLSKQNAAISIKQFSESSWLLSRPIKKPGIFKLCFVPHETGCPAHLGTCTVESSFCIIEADALKPLVRLLREQEIGTCEASLDALLTLIHGGTPQGGGCKVLADADAITPLINLLSLQSDRLEEKILVALEKIFQVDEIKNKYKASATMPLVDMTQRKDSHRLRSLAARVLAQLGVLEKQSSYF 1009
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju07g1770 1009 PANTHER RING-TYPE E3 UBIQUITIN TRANSFERASE 15 1009 - -
Alju07g1770 1009 SUPERFAMILY ARM repeat 503 846 IPR016024 -
Alju07g1770 1009 Pfam MCAfunc domain 25 141 IPR045766 -
Alju07g1770 1009 Gene3D - 18 127 IPR036537 GO:0007166
Alju07g1770 1009 ProSiteProfiles U-box domain profile. 260 334 IPR003613 GO:0004842|GO:0016567
Alju07g1770 1009 Gene3D - 337 434 IPR011989 -
Alju07g1770 1009 Gene3D - 435 859 IPR011989 -
Alju07g1770 1009 SUPERFAMILY ARM repeat 879 1000 IPR016024 -
Alju07g1770 1009 Pfam U-box domain 265 331 IPR003613 GO:0004842|GO:0016567
Alju07g1770 1009 SMART arm_5 531 571 IPR000225 GO:0005515
Alju07g1770 1009 SMART arm_5 919 960 IPR000225 GO:0005515
Alju07g1770 1009 SMART arm_5 490 530 IPR000225 GO:0005515
Alju07g1770 1009 SMART arm_5 666 707 IPR000225 GO:0005515
Alju07g1770 1009 SMART arm_5 801 841 IPR000225 GO:0005515
Alju07g1770 1009 SMART arm_5 365 405 IPR000225 GO:0005515
Alju07g1770 1009 SMART arm_5 752 798 IPR000225 GO:0005515
Alju07g1770 1009 SMART arm_5 875 915 IPR000225 GO:0005515
Alju07g1770 1009 SMART arm_5 448 489 IPR000225 GO:0005515
Alju07g1770 1009 SMART arm_5 407 447 IPR000225 GO:0005515
Alju07g1770 1009 SMART Ubox_2 264 327 IPR003613 GO:0004842|GO:0016567
Alju07g1770 1009 Coils Coil 67 87 - -
Alju07g1770 1009 SUPERFAMILY RING/U-box 249 333 - -
Alju07g1770 1009 CDD RING-Ubox_PUB 265 314 IPR045210 -
Alju07g1770 1009 Coils Coil 154 181 - -
Alju07g1770 1009 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 542 584 IPR000225 GO:0005515
Alju07g1770 1009 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 240 336 IPR013083 -
Alju07g1770 1009 Gene3D - 866 1001 IPR011989 -
Alju07g1770 1009 SUPERFAMILY ARM repeat 335 528 IPR016024 -
Alju07g1770 1009 Pfam Armadillo/beta-catenin-like repeat 532 570 IPR000225 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju07g1770 Alju-ChrAlju07 43955246 43958920 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju07g1770 263 1009 U-box Gene Family AT1G76390 27.617 1.82e-64 232