Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju07g1750 ATGACATCACAGAGAAACCCCATTGAACAGAGGGAGGAGGCGCAAAGGAAATCGGCGGCGATGCAGATCTTCGTGAAAACCCTGACCGGCAAGACCATTACCCTCGAGGTCGAATCCAGTGACACCATTGACAATGTCAAAGCTAAGATTCAGGACAAAGAAGGCATTCCACCGGACCAACAGAGGCTGATCTTCGCCGGGAAGCAGCTGGAGGATGGCCGTACTCTTGCCGATTATAACATTCAGAAAGAGTCAACATTGCACCTTGTTTTGAGGCTTAGGGGTGGCATTATTGAGCCGTCATTGATGGCATTGGCCAGGAAATACAATCAGGACAAGATGATCTGCCGCAAGTGTTATGCTCGTTTACACCCTCGTGCTGTCAACTGCAGGAAAAAGAAGTGTGGACACAGCAACCAGCTGAGGCCAAAGAAGAAGATCAAGTAA 447 0.4922 MTSQRNPIEQREEAQRKSAAMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGIIEPSLMALARKYNQDKMICRKCYARLHPRAVNCRKKKCGHSNQLRPKKKIK 148
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju07g1750 148 SUPERFAMILY Ubiquitin-like 17 96 IPR029071 -
Alju07g1750 148 SMART Ribosomal_L40e_3 97 148 IPR001975 GO:0003735|GO:0005840|GO:0006412
Alju07g1750 148 PRINTS Ubiquitin signature 52 72 IPR019956 -
Alju07g1750 148 PRINTS Ubiquitin signature 31 51 IPR019956 -
Alju07g1750 148 PRINTS Ubiquitin signature 73 94 IPR019956 -
Alju07g1750 148 ProSiteProfiles Ubiquitin domain profile. 21 96 IPR000626 GO:0005515
Alju07g1750 148 Gene3D - 100 148 IPR038587 -
Alju07g1750 148 ProSitePatterns Ubiquitin domain signature. 47 72 IPR019954 -
Alju07g1750 148 Pfam Ribosomal L40e family 98 147 IPR001975 GO:0003735|GO:0005840|GO:0006412
Alju07g1750 148 SMART ubq_7 21 92 IPR000626 GO:0005515
Alju07g1750 148 Pfam Ubiquitin family 23 94 IPR000626 GO:0005515
Alju07g1750 148 CDD Ubl_ubiquitin 21 96 - -
Alju07g1750 148 FunFam Ubiquitin-60S ribosomal L40 fusion 21 98 - -
Alju07g1750 148 SUPERFAMILY Zn-binding ribosomal proteins 96 147 IPR011332 GO:0006412
Alju07g1750 148 FunFam ubiquitin-60S ribosomal protein L40 99 148 - -
Alju07g1750 148 PANTHER UBIQUITIN 21 107 - -
Alju07g1750 148 Gene3D - 14 99 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju07g1750 Alju-ChrAlju07 43717531 43719311 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju07g1750 21 148 Cytoplasmic Ribosomal Protein Gene Family AT3G52590 99.219 3.87e-93 263