Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju07g1730 ATGAGTGGTCGCTTTTCTCGCACTATTTATGTCGGCAACCTGCCCTCAGATATAAGAGAGTCAGAAATTGAGGATCTATTCTACAAGTATGGCCGTATATTGGATATTGAGTTAAAGATTCCACCTCGACCTCCATGTTATTGTTTTGTTGAGTTTGACAATGCTCGAGATGCGGAAGATGCAATTCGTGGTCGTGATGGCTACAATTTTGATGGCTGTCGATTAAGGGTGGAGCTTGCTCATGGTGGTAGGGGACCATCATCAAGTGATCGGCGTGGTTATGGTGGTGGTGGTGGTGGTGGTGGTGGTGGTGGTGGTGGGAGCCGTTTTGGCACATCACGTCATTCTGAATATCGAGTTATTGTACGTGGACTCCCATCATCTGCATCGTGGCAGGATTTGAAGGATCATATGCGGAAAGCTGGTGATGTATGTTTTGCTGAGGTTTCACGTGATAGTGAAGGTACATTTGGCATTGTTGACTACACTAATTATGACGACATGAAATATGCTATTCGGAAACTTGATGACACTGAATTTAGAAATCCTTGGGCAAGAGCTTATATTCGGGTGAAGAAATATGAGGCCAGTCCCACAAGGAGCCGCAGCCGCAGCAGGAGCCCTGGCAGAAGCAGAAGTCCTAAAAGGAATAGAAGTAGGTCATTGGAGCGATCTTTATCCAGGTCACCATCTAGGTCTAGATCACCATCACCAATCAAATCTAGGCCAAGATCACCATCACGGTCTCGGTCTCGGTCACAATCTGCATCACCACGCCAGGCTCGGTCAGGAAGTGGTTGA 801 0.4694 MSGRFSRTIYVGNLPSDIRESEIEDLFYKYGRILDIELKIPPRPPCYCFVEFDNARDAEDAIRGRDGYNFDGCRLRVELAHGGRGPSSSDRRGYGGGGGGGGGGGGGSRFGTSRHSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEGTFGIVDYTNYDDMKYAIRKLDDTEFRNPWARAYIRVKKYEASPTRSRSRSRSPGRSRSPKRNRSRSLERSLSRSPSRSRSPSPIKSRPRSPSRSRSRSQSASPRQARSGSG 266
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju07g1730 266 SMART rrm1_1 8 78 IPR000504 GO:0003723
Alju07g1730 266 SMART rrm1_1 119 188 IPR000504 GO:0003723
Alju07g1730 266 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 9 76 IPR000504 GO:0003723
Alju07g1730 266 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 120 182 IPR000504 GO:0003723
Alju07g1730 266 Gene3D - 2 116 IPR012677 -
Alju07g1730 266 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 118 196 IPR000504 GO:0003723
Alju07g1730 266 MobiDBLite consensus disorder prediction 228 266 - -
Alju07g1730 266 SUPERFAMILY RNA-binding domain, RBD 6 188 IPR035979 GO:0003676
Alju07g1730 266 Gene3D - 117 195 IPR012677 -
Alju07g1730 266 FunFam serine/arginine-rich splicing factor SR34A-like 2 117 - -
Alju07g1730 266 MobiDBLite consensus disorder prediction 81 110 - -
Alju07g1730 266 PANTHER RNA RECOGNITION MOTIF RRM DOMAIN CONTAINING PROTEIN 7 256 - -
Alju07g1730 266 MobiDBLite consensus disorder prediction 194 266 - -
Alju07g1730 266 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 7 82 IPR000504 GO:0003723
Alju07g1730 266 FunFam serine/arginine-rich splicing factor SR34A-like 118 195 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju07g1730 Alju-ChrAlju07 43513425 43516579 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju07g1730 8 176 Eukaryotic Initiation Factors Gene Family AT4G34110 26.286 1.00e-07 50.8