Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju07g1646 ATGGCTCGCCTACTGCTAAGCACAGATTCAACCTCAACCCCATCAGGTAATGGCAACAGAACAGGGGGTTTTAACACAAGTGATGCCAATTTTGACACAAACATGGTGATTATACTAGCAGCCTTGCTCTGTGCACTAATATGTGCTTTAGGGTTAAACTCAATTGTAAGATGTGCTTTGAGATGCAGCAGGAGGTTTGCTTTTGAGACACCAGATGAAGCTGCAGCTCGTGTAGCAGCAAAAGGGTTGAAGAAGAGTGTGTTGCGTCAGATCCCTATAGTTGTACATGGTTCATCGGGTTCTACTGATATTGGAGCCACTGAGTGTCCAATTTGCCTAGGAGAGTTTGTGGATGGAGAGAAAGTTAGGGTTCTTCCAAACTGCAACCATGGATTCCATGTTAGGTGCATAGACACATGGCTTCTCTCACATTCTTCTTGCCCTACTTGCAGACAGTCTTTGCTTGAACAACATAGTGCTGCAAACACTTCTGGTTCTGGGCATGTATAG 510 0.449 MARLLLSTDSTSTPSGNGNRTGGFNTSDANFDTNMVIILAALLCALICALGLNSIVRCALRCSRRFAFETPDEAAARVAAKGLKKSVLRQIPIVVHGSSGSTDIGATECPICLGEFVDGEKVRVLPNCNHGFHVRCIDTWLLSHSSCPTCRQSLLEQHSAANTSGSGHV 169
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju07g1646 169 CDD RING-H2_EL5-like 108 151 - -
Alju07g1646 169 Pfam Ring finger domain 108 151 IPR001841 -
Alju07g1646 169 FunFam RING-H2 finger protein ATL72-like 74 155 - -
Alju07g1646 169 SUPERFAMILY RING/U-box 108 158 - -
Alju07g1646 169 SMART ring_2 109 150 IPR001841 -
Alju07g1646 169 ProSiteProfiles Zinc finger RING-type profile. 109 151 IPR001841 -
Alju07g1646 169 PANTHER RING-H2 FINGER PROTEIN ATL78 24 161 IPR044602 GO:0016567|GO:0016740
Alju07g1646 169 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 67 156 IPR013083 -
Alju07g1646 169 MobiDBLite consensus disorder prediction 1 24 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju07g1646 Alju-ChrAlju07 42693214 42693723 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju07g1646 1 164 C3H Transcription Factor Family AT3G10910 60.116 8.31e-63 189