Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju07g1565 ATGCACAGAGAGGACTTTGATATGTGCGGTGGCTCAAAAACTAAACTTTCTCCCTCTAATAACGACATGGATAGCGAGTTTCTGAAGCAGAATCGTGATGTTCTCTGTAACATCTCAAGTCTGCTCGAGCTGTCTGCGACTGATGATCTTGAAACTTTCAGGAGGGAAGTAGAAGAGAAGGGTTCTGATGTGAACGAGGAAAGCTTTTGGTATGGAAGAAGAATTGGAACAAAGAAGATGGGATTGGAAAAGAGGACGCCTCTCATGGTTGCTTCTTTATTTGGAAGCACTGAGGTCCTGAAGTATATTATTGAAACAGGCAGAGTTGATGTGAACAGGGCCTGTGGTTCCGATAAGGCCACGGCTCTCCACTGCGCTGTCACCGGTGGCTCTGAATCCTCACTTCAGATTGTTAAGCTCTTGCTTGATGCGAAGGCTGATCCTGATTGCCTTGATGCGAGCAGAAACAAGCCTGTTAATTTGATTGCTCCTGCTTTTAGTTCTTCATCCAGCCTGCGAAGGAAGGCGATGGAGTCGTTGCTGAGAGGTGATGAATTAAGTGAGGGAAGTCATCAAATTATTGAACAGGAGGCGGAGCAACAGAAAACTACAGCGCCGGCAGAGAAGAAAGAATATCCTGTTGATATATCTTTGCCTGACATAAACATTGGTATATATGGAACAGATGAGTTCAGGATGTACAGCTTCAAGGTGAAGCCGTGTTCAAGGGCATACTCTCACGACTGGACCGAGTGTCCATTTGTTCATCCCGGGGAGAATGCAAGGAGGAGGGATCCAAGGAAGTATCCTTATAGCTGTGTTCCTTGCCCGGAGTTCCGCAAGGGAAGCTGCCCCAAGGGGGATTCCTGTGAGTATGCTCACGGTGTTTTCGAGTCATGGCTTCATCCTGCTCAATACCGAACAAGGCTTTGCAAGGATGAGACTGGTTGCTCACGTAAAGTTTGCTTCTTTGCTCACAAACCTGAAGAGTTACGCCCTGTGTATGCTTCCACTGGTTCAGCAATGCCTTCTCCAAAATCCTTTTCAGTTAGTGGGCTTGACAATACAGTTATGAGTCCTTTAGCTCTTAGCTCCTCATCTTTGCCAATGTCAACAGTTTCAACACCGCCCTTGTCTCCTTTGGCTGCTTCATCTCCCAAGAGTGGAAGCTTGTGGCAGAACAAAATAAACCTCACCCCACCGGCCCTGCAGCTCCCGGGTAGCCGGCTGAAGGCGGCCTTAAGTGCTAGGGATCTTGATTTGGAGATGGAACTGCTCGGGCTAGAAAGTTCGGCTAACCACCACCAGCAGCAGCAGTTGATAGAAGAGATAGCTCGAATCTCTTCCCCATCTTTCCGAAACAAAGAGTATGGTAGGATAGGTGATTTGAAGCCAACCAACCTCGATGACCTTTTGGGATCTGTTGATCCTTCTGTTCTTTCTCAACTTCATGGACTTTCACCAAAACCTTCAATGCCTACTCAGCTACAATCTCCCAATGGGCTTCAAATGCACCAAAACATGAACCACCTTCGCACAAGCTATCCAACCAACCTTCCTTCCTCACCGGCAAGAAGTTCCTTGGGTTTAGGGTTTGACTCATCCTCTGCTGTGGCTGCAGCAGTGATGAACTCAAGATCTGCGGCCTTCACAAAGCGAAGCCAAAGTTTTATTGATCGTGGGGCAATATCGCCCCACCATTTCGGGCAATCCACAGCCTCCAACACTGCATGTAGGGTTTCTTCTGCACTTTCAGATTGGAGATCCCCTGATGGGAAACTGGATTGGGGCATGAATGGAGATGAGCTGAACAAACTGAAGAAATCTGCTTCTTTTGGGTTCAGAAACAATGGAAACACTAACACCACCGGGGCACGGTCTGAAAATTTTGAGCCAGACGTGTCGTGGGTTAATTCGTTGGTTAAAGATGTTCCCTCTGAGAAGCAGCAGCAGCAGCAGCAATTTGATCCCAGTAGAGAGATGCTTTCACCATGGGTGGAGCAAATGTATAGAGAACACGAGCAGATAGTTGCATAA 2037 0.4747 MHREDFDMCGGSKTKLSPSNNDMDSEFLKQNRDVLCNISSLLELSATDDLETFRREVEEKGSDVNEESFWYGRRIGTKKMGLEKRTPLMVASLFGSTEVLKYIIETGRVDVNRACGSDKATALHCAVTGGSESSLQIVKLLLDAKADPDCLDASRNKPVNLIAPAFSSSSSLRRKAMESLLRGDELSEGSHQIIEQEAEQQKTTAPAEKKEYPVDISLPDINIGIYGTDEFRMYSFKVKPCSRAYSHDWTECPFVHPGENARRRDPRKYPYSCVPCPEFRKGSCPKGDSCEYAHGVFESWLHPAQYRTRLCKDETGCSRKVCFFAHKPEELRPVYASTGSAMPSPKSFSVSGLDNTVMSPLALSSSSLPMSTVSTPPLSPLAASSPKSGSLWQNKINLTPPALQLPGSRLKAALSARDLDLEMELLGLESSANHHQQQQLIEEIARISSPSFRNKEYGRIGDLKPTNLDDLLGSVDPSVLSQLHGLSPKPSMPTQLQSPNGLQMHQNMNHLRTSYPTNLPSSPARSSLGLGFDSSSAVAAAVMNSRSAAFTKRSQSFIDRGAISPHHFGQSTASNTACRVSSALSDWRSPDGKLDWGMNGDELNKLKKSASFGFRNNGNTNTTGARSENFEPDVSWVNSLVKDVPSEKQQQQQQFDPSREMLSPWVEQMYREHEQIVA 678
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju07g1565 678 Gene3D - 271 333 - -
Alju07g1565 678 MobiDBLite consensus disorder prediction 1 22 - -
Alju07g1565 678 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 275 295 IPR000571 GO:0046872
Alju07g1565 678 SUPERFAMILY Ankyrin repeat 40 160 IPR036770 -
Alju07g1565 678 ProSiteProfiles Ankyrin repeat profile. 118 153 IPR002110 GO:0005515
Alju07g1565 678 FunFam Zinc finger CCCH domain-containing protein 66 228 296 - -
Alju07g1565 678 SMART ANK_2a 118 150 IPR002110 GO:0005515
Alju07g1565 678 SMART ANK_2a 83 113 IPR002110 GO:0005515
Alju07g1565 678 PANTHER UNKEMPT FAMILY MEMBER 43 644 IPR045234 -
Alju07g1565 678 SMART c3hfinal6 305 328 IPR000571 GO:0046872
Alju07g1565 678 SMART c3hfinal6 270 296 IPR000571 GO:0046872
Alju07g1565 678 ProSiteProfiles Ankyrin repeat region circular profile. 118 152 - -
Alju07g1565 678 Pfam Ankyrin repeats (3 copies) 76 150 IPR002110 GO:0005515
Alju07g1565 678 Gene3D - 37 182 IPR036770 -
Alju07g1565 678 ProSiteProfiles Zinc finger C3H1-type profile. 270 297 IPR000571 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju07g1565 Alju-ChrAlju07 41836581 41839945 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju07g1565 8 643 C2H2 Transcription Factor Family AT5G12850 41.092 8.15e-142 429
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Alju07g1565 Ank_2 5.7e-08 CL0465
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Alju07g1565 07 41836581 41839945 Alju07g1565 07 41836581 41839945 ECH