Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju07g1460 ATGGCTCCTTCAGAAGTCAATCATCTCTCTCACCCTTGTATATATGGGGATTTTGCTTCCTCATACTCTGAGAGGAAGTCTGGATTTATGAAATGGATTAGTAAGCTTTTCAAAGGTGGGTCCAGTCGAGGAAGGGGAGGTCGTCATCTTCAGCAGCCTACAGAGGAAAATTTGGTTTGGCGTAATCCAGCTAGATCATTGGATGACCGATCTAGAGCTCAGAAGGAGAAAGAGGATCTGGACCACGCAATTGCTCTTTCTTTTGCTGACGATTTGAAGAGACCAAATAGATATAGATGGCGTGGAGAAATTGATGAAGATTACGGGAGTGAATTTCAGGACAACCATAACTCATCTGCACATCCTCCATATGGCCGGGCAACATATGGGGAAATTAGGGTATGTGGTGGGTGCAAGCGGGAGATTGTCCATGGGAATTGTTTAAGATGCAATAATACTTATTTTCATCCAGGGTGCTTTCGCTGTCACTCTTGTCGCTACCCCATTAGTGAGCACGAGTTTTCTTTATCAGGGAAGCATCCGTATCACAAGTCCTGTTTCAAAGAGTTGACCCATCCAAAATGTGAAGTTTGCTTCCAATTTATTCCTATAAATGCTGCCGGTTTGATTGAGTATAGGTGTCACCCATTTTGGTCCCAAAAATATTGTCCAGCTCACGAATACGATGATACAGCTCGCTGCTGTAGTTGTGAAAGATTGGAGTCTTTGAATGCAAAATACTATAGTTTGGAAGATGGGCGGAGTTTATGTTTAGAGTGCATGGAGTCAGCTATTATGGACACTGGAGATTGTCAACCTCTTTACCATGCCATTAGAGATTATTATGAAGGAATGAATATGAAAATAGACCAACAAATTCCTATGCTTCTGGTTGAGAGGCAAGCACTCAATGAAGCTATTGTTGGGGATAAAAATGGTTACCATCACATGCCAGAGACAAGAGGCTTGTGCCTTTCTGAAGAGCTGACTGTCACCAGTATTCATCGAAGGCCAAGAATTGGAGGCTACCGGCTTATTGGAATGCGAACCCAACCTCAAAAGCTAACGAGAAAATGTGAAGTTACCGCCATTCTTGTTCTCTACGGTCTTCCAAGGTTACTCACAGGTGCTATCCTTGCCCATGAGTTGATGCACGGCTGGTTACGTCTTAAAGGTTACCGTAATCTTAATCCTGAAGTAGAGGAAGGAATCTGTCAGGTTCTGTCTTATATGTGGCTTGATTCAGAAGTAATGCCTAACCTTCAAAGCATGCCTTCAACTTCAGCAGCTTCCTCCTCCTCCTCTTCCTATTACTCACACTACTCATCATCATCTAAGAAAGGAGCCAAATCTGAAGTTGAAAATAAACTGGGACGGTTTTTCATGAATCAGATAGCCAATGATTCTTCTCCAGCATATGGGGGTGGCTTTAGAGCTGCTAATGAGGCTGTGAACAAATATGGTTTACGTAGTACTCTTGAACATATTCGTTTGACTGGTAGTTTCCCACTGTAA 1515 0.4284 MAPSEVNHLSHPCIYGDFASSYSERKSGFMKWISKLFKGGSSRGRGGRHLQQPTEENLVWRNPARSLDDRSRAQKEKEDLDHAIALSFADDLKRPNRYRWRGEIDEDYGSEFQDNHNSSAHPPYGRATYGEIRVCGGCKREIVHGNCLRCNNTYFHPGCFRCHSCRYPISEHEFSLSGKHPYHKSCFKELTHPKCEVCFQFIPINAAGLIEYRCHPFWSQKYCPAHEYDDTARCCSCERLESLNAKYYSLEDGRSLCLECMESAIMDTGDCQPLYHAIRDYYEGMNMKIDQQIPMLLVERQALNEAIVGDKNGYHHMPETRGLCLSEELTVTSIHRRPRIGGYRLIGMRTQPQKLTRKCEVTAILVLYGLPRLLTGAILAHELMHGWLRLKGYRNLNPEVEEGICQVLSYMWLDSEVMPNLQSMPSTSAASSSSSSYYSHYSSSSKKGAKSEVENKLGRFFMNQIANDSSPAYGGGFRAANEAVNKYGLRSTLEHIRLTGSFPL 504
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju07g1460 504 Pfam Protein DA1 284 499 IPR022087 -
Alju07g1460 504 Gene3D Cysteine Rich Protein 127 202 - -
Alju07g1460 504 Pfam LIM domain 135 188 IPR001781 -
Alju07g1460 504 CDD LIM_DA1 135 187 - -
Alju07g1460 504 ProSitePatterns LIM zinc-binding domain signature. 135 169 IPR001781 -
Alju07g1460 504 ProSiteProfiles LIM domain profile. 133 193 IPR001781 -
Alju07g1460 504 SMART lim_4 134 186 IPR001781 -
Alju07g1460 504 FunFam Protein DA1-related 2 123 188 - -
Alju07g1460 504 PANTHER PROTEIN DA1-RELATED 2 32 503 IPR045218 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju07g1460 Alju-ChrAlju07 40231081 40235524 Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Alju07g1460 DA1-like 1.4e-99 CL0126
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Alju07g1460 07 40231081 40235524 Alju07g1460 07 40231081 40235524 CCT
Alju07g1460 07 40231081 40235524 Alju07g1460 07 40231081 40235524 ECH