Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju07g1418 ATGGCTACGGGGACGACGCCATCTTCTTATTGGTGTTACAGATGCAGTCGGTTTGTGAGGGTCCGGCGGCTGGACACGGTGGTCTGTCCCGACTGCGACGGTGGATTTGTGGAGGAGATTGAGCAAATGCCTCGCCCTGCCTCCATCGTCGATTCGCGCCGGCAGAGGTTTCCGGCGGCTTCGATGTACATGATTGGCAATCATCCCCCCAGTTCTGGACAGCCTCTGCGTCCTGCTTTGAGGAGGGCTCGTCGGAGCAGCGGTGATATTTCTATGGTGAATCCGGTTGTCGTGCTCCGGGGATCGCCTAACCGGGCGGGTCCTGATTCCGGCGGAGGAGGACATGGTCGCGGGTTTGATCTTTACTACGAAGATGGGTCCGGGTCCGGTCTTCGTCCTCTGCCTCCAAACATGTCAGAGATGCTTCTGGGATCTGGAATCGATAGGCTTCTGGAACAGCTTTCTCAGATTGAAATGAACGGTATTTCGCGATACGAGCCACCTCCGGTTTCCAAAGCCGCCATCGATTCATTGCCGACGATTGAGATTCACGAGAATCATCTCGCGACGGAACCTCACTGCGCCGTTTGTATGGAGCCTTTTGAATTGGGCACAAACGCTCGTGAATTGCCCTGCAAGCACATTTACCATTCAGATTGCATCTTGCCGTGGCTTGCGCTCCGGAATACTTGCCCTGTTTGCCGGCAAGAGCTCCCGGCAGATACGCAGGGCGTTAACGGTCCTGTTTCTGGGCATTCTCTGGCTTGGAACGACGATGACAATGTGGGATTGACTATTTGGAGGCTTCCTGGTGGTGGCTTCGCGGTGGGAAGGTTCGCCGGCGGGAGAAGAAGTACTTCTGATCGTGAGCTTCCTGTTGTGTACACAGAAATGGACGGTGGTATTGGAAATGGCGGCGAACCGAGGAGGGTGACTTGGTCGACGACGACGGAGGGTCGACGAAGAGACAGTGGAGGAGGAGGATTGCGCAAAATGTTTCGTAATCTTTTTGGTTGCTTCACTCCTAGAACTCGAGCTCAATTCTCTGCTTCTTCATCATCATCATCTCCTTCTCCAGAACCTCGACCTTTGAGGAGGAGTACTTCTCGTTCTCGTCCCGTCATGAATACCTCGATGCGTTCCCGAAGAACTTGGTCTCTGGACGGCAATGGCGGAACCAGACCTTGGTAA 1191 0.5458 MATGTTPSSYWCYRCSRFVRVRRLDTVVCPDCDGGFVEEIEQMPRPASIVDSRRQRFPAASMYMIGNHPPSSGQPLRPALRRARRSSGDISMVNPVVVLRGSPNRAGPDSGGGGHGRGFDLYYEDGSGSGLRPLPPNMSEMLLGSGIDRLLEQLSQIEMNGISRYEPPPVSKAAIDSLPTIEIHENHLATEPHCAVCMEPFELGTNARELPCKHIYHSDCILPWLALRNTCPVCRQELPADTQGVNGPVSGHSLAWNDDDNVGLTIWRLPGGGFAVGRFAGGRRSTSDRELPVVYTEMDGGIGNGGEPRRVTWSTTTEGRRRDSGGGGLRKMFRNLFGCFTPRTRAQFSASSSSSSPSPEPRPLRRSTSRSRPVMNTSMRSRRTWSLDGNGGTRPW 396
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju07g1418 396 MobiDBLite consensus disorder prediction 347 388 - -
Alju07g1418 396 Pfam Protein of unknown function (DUF1117) 262 379 IPR010543 -
Alju07g1418 396 MobiDBLite consensus disorder prediction 297 329 - -
Alju07g1418 396 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 158 241 IPR013083 -
Alju07g1418 396 Pfam zinc-ribbon 9 40 IPR039525 GO:0061630
Alju07g1418 396 SUPERFAMILY RING/U-box 174 242 - -
Alju07g1418 396 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 88 239 - -
Alju07g1418 396 SMART ring_2 194 234 IPR001841 -
Alju07g1418 396 CDD RING-H2_RNF126-like 194 235 - -
Alju07g1418 396 Pfam Ring finger domain 193 235 IPR001841 -
Alju07g1418 396 ProSiteProfiles Zinc finger RING-type profile. 194 235 IPR001841 -
Alju07g1418 396 MobiDBLite consensus disorder prediction 347 396 - -
Alju07g1418 396 FunFam E3 ubiquitin-protein ligase RING1-like 156 241 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju07g1418 Alju-ChrAlju07 39721186 39722376 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju07g1418 131 243 C3H Transcription Factor Family AT5G01980 41.593 1.13e-23 100