Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju07g1390 ATGAAGCTTGATTACCACAAGTCTTGTGTGCTTGAGGAAGAAGATGGGTTCAGCAACGATTCTGCCATAACCCACCATTCTCCTTCTGCTCCTATGAGTGTTTACAAGGCCACAAGCAATCATCATCTTGCTGAGGAACCAGCTGCACAATCTCTCATCAACTCCAAAGCCAATAATGGCGGTGAATCGTTGCTTAGCTTTCAGCAGAAAGAGTACTGTTTGTGGGAGAACAATAATAATGGTTTGATTCAGTGGAATTATCAGATTAGCCCCAGAAGCAATTCAGAACAAACAACACTGATTCAGGATTTTAATTGCATTCAAACTGCTAGTAGTGGCTATGGATCAGGATCATCGAAAGAGAAGCAGCAAGGTGAGAGTTCATCATCATCATATGGGCGGCTATACTCTGAACCAAATGTTCCTTCTGATACTAATAGCCTTCATCATGATTCTTCACCAACAGAAAAAGAAGCTTCCTCCAATAAGCGCCTTTCAATGGGAGAGAGCATGCAAGCCTCAAAGAAGCAATGCACTGCTGCTTGTAAAACACCAAAGCCAACAAAGTCATCAAACCCATCTAAGGATCCTCAAAGTGTAGCAGCCAAGAACAGAAGAGAGAGGATAAGTGAAAGACTCAAGATACTTCAAGAACTAGTCCCTAATGGCTCCAAGGTTGACATGGTGACCATGTTGGAGAAAGCCATTAGTTATGTGAAGTTTCTTCAACTGCAAGTGAAGGTACTGGCAACTGATGAATTTTGGCCAGTGCAAGGAGGAAAAGCACCTGATATTTCTCAAGTGAAAGAAGCCATTGATGCTATTCTTTCATCTCAGAGAGACAGAAACTCAACCTCCAAGCAACAGAAATGA 873 0.4227 MKLDYHKSCVLEEEDGFSNDSAITHHSPSAPMSVYKATSNHHLAEEPAAQSLINSKANNGGESLLSFQQKEYCLWENNNNGLIQWNYQISPRSNSEQTTLIQDFNCIQTASSGYGSGSSKEKQQGESSSSSYGRLYSEPNVPSDTNSLHHDSSPTEKEASSNKRLSMGESMQASKKQCTAACKTPKPTKSSNPSKDPQSVAAKNRRERISERLKILQELVPNGSKVDMVTMLEKAISYVKFLQLQVKVLATDEFWPVQGGKAPDISQVKEAIDAILSSQRDRNSTSKQQK 290
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju07g1390 290 SMART finulus 199 248 IPR011598 GO:0046983
Alju07g1390 290 CDD bHLH_AtIND_like 194 256 - -
Alju07g1390 290 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 192 251 IPR036638 GO:0046983
Alju07g1390 290 Gene3D - 189 250 IPR036638 GO:0046983
Alju07g1390 290 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 193 242 IPR011598 GO:0046983
Alju07g1390 290 FunFam Transcription factor bHLH83 191 250 - -
Alju07g1390 290 MobiDBLite consensus disorder prediction 159 199 - -
Alju07g1390 290 Pfam Helix-loop-helix DNA-binding domain 203 243 IPR011598 GO:0046983
Alju07g1390 290 MobiDBLite consensus disorder prediction 112 149 - -
Alju07g1390 290 PANTHER TRANSCRIPTION FACTOR HEC3-RELATED 38 252 IPR045843 GO:0003700|GO:0006355
Alju07g1390 290 MobiDBLite consensus disorder prediction 112 205 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju07g1390 Alju-ChrAlju07 39250074 39251420 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju07g1390 135 284 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G66470 69.536 2.05e-60 192
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Alju07g1390 HLH 6.1e-08 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Alju07g1390 07 39250074 39251420 Alju07g1390 07 39250074 39251420 CCT
Alju07g1390 07 39250074 39251420 Alju07g1390 07 39250074 39251420 ECH