Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju07g1301 ATGACCCGAAGGAAGGTGAGGCTCGCGTTCATTTGCAACGACTCTGCGAGGAAGACAACCTACAAGAAGAGGAAGAATGGGATGGTGAAGAAGGCTAGTGAACTTGTCACCCTTTGTGGGGTTGAGGCCTGTATGATAATATACAGTCCTTATGAAGCTGAGCCTGAGATTTGGCCTTCCACCATGGGAGTTGAAAGCACAATTGTGAGGTTCAGGCAGATGCCGGAGATGGAACAATGCAAAAAAATGATGAACCAGATGAGCTTCACGAGGGAGCAGATCCAAAAAGTCAGCGAGCAAGTGAAGAAGATGAGGAAGAGCAACAGGGAGAAGCAGCTGACCCAGATCATGTATCAGTACATGAGCACTGGGATTTTTCTGCAGAATTTGACTGTCAATGATCTCCATGATATGAAATGGCTGATTGAGCACAACCTGAGGGATGTCACTAGGAAGATGGAGGCTATGGATATTCAGCCTCAGAATGAAACCCAAATCCAAAGTCAGGAACAAGAACAACAAGAAGCAGGAGAAGATAACAACAATGGCAAGGGAATTATGGAGTTTAACATGAGCACATTGCAGAGGCAGCAGAATTTTATGGAACTGATGAACTATGCTGGAGAGGAAACAATTCCATTTGGAGATGCCAATCTCTACAATGCTTGGCCTAGCCCCTTTTACTTCTGA 690 0.4522 MTRRKVRLAFICNDSARKTTYKKRKNGMVKKASELVTLCGVEACMIIYSPYEAEPEIWPSTMGVESTIVRFRQMPEMEQCKKMMNQMSFTREQIQKVSEQVKKMRKSNREKQLTQIMYQYMSTGIFLQNLTVNDLHDMKWLIEHNLRDVTRKMEAMDIQPQNETQIQSQEQEQQEAGEDNNNGKGIMEFNMSTLQRQQNFMELMNYAGEETIPFGDANLYNAWPSPFYF 229
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju07g1301 229 ProSiteProfiles MADS-box domain profile. 1 49 IPR002100 GO:0003677|GO:0046983
Alju07g1301 229 Coils Coil 80 107 - -
Alju07g1301 229 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Alju07g1301 229 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Alju07g1301 229 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Alju07g1301 229 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Alju07g1301 229 MobiDBLite consensus disorder prediction 160 186 - -
Alju07g1301 229 FunFam agamous-like MADS-box protein AGL80 13 97 - -
Alju07g1301 229 SUPERFAMILY SRF-like 2 95 IPR036879 GO:0003677|GO:0046983
Alju07g1301 229 Gene3D - 13 123 IPR036879 GO:0003677|GO:0046983
Alju07g1301 229 CDD MADS_SRF_like 2 85 IPR033897 GO:0000981|GO:0000987|GO:0045944
Alju07g1301 229 PANTHER SERUM RESPONSE FACTOR HOMOLOG 3 174 - -
Alju07g1301 229 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 11 51 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju07g1301 Alju-ChrAlju07 37779524 37780213 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju07g1301 1 156 Type I MADS-box Gene Family AT5G48670 47.436 1.73e-46 155
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Alju07g1301 SRF-TF 1.3e-17 No_clan