Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju07g1299 ATGGTTTTGTCAGGGACGCTGAGGAAAGTTTTCAGACGTGCCCACAAAGTGAAAGCCCTTCCCGGCGGCGAACTCGACTTGGAACCTGTGATTCCGACTCACTTCCGGTGCCCTGTGAGCCTTGAACTGATGAAAGATCCGGTGACTCTGTGCACCGGAATCTCCTACGACAGGGACAGCATCGAGAGGTGGATTGAATCTGGGAACAACACTTGCCCAGTGACCAAGCAGGTTCTTTCGAGCACTCACATGATCCCAAATCACGCCATTCGGAGAATGATCCAAGACTGGTGCGTGGAAAACCAGTCTTGCGGGATCGAAAGAATCCCCACTCCGAGGATCCCCGTCGCGCCGTACGAGGTTTCGGAGACTTGTTCGAGGATAATCGCTGCCACACGTAATGGGGATGTGAAAAAGTGTCAAGAATTGGTGGGGAAGATTAAGAATTGGGGTAAAGAGAGCGAGAGGAACAAGAGGTGTATAGTGGAAAATGGTGCTTGTGCAGTGTTGGCCTCTGCCTTTGATTCTTTCTCACATGGGAACATCGAGGAAAACGAGGTTGTTCTAGAGGAGATCTTGGGGGTACTCCCATGGGTGATGAATAATCATTCCCAAGAAGATGCAAGATCGAAATTGAGGTCTGAGACATGTTTGAATTGCTTGGTTTGGTTTCTGAATGGGAACGACCTTTCAGCAAGGCAAAATGCAGCCATGGTGCTCAAGGAAATGCCTGTGGGAGCTATTGCTAAAACTGAAGGTGTAATTGAAGCTTTGGTGAAGATGATTAAAGAGCCTATAGGACCTAATGCAACCAAAGCAAGCTTGACCAAGATTTTCCAGTTGGTTTCCTCATCAGATGATGACAAAGAGAGAATCTCACGGAGATTTGTGGAACTGGGTTTGGTTTCTTTGTTGCTGGAGGCCATTGTTGATGCAGACAAAAGCATATGTGAGAAGGCTTTGGGTGTGTTGGATTGCATCTGTGATTGTAAAGAAGGAAAGGAAGTGGCCATGGCTAATGCTCTGACCCTGCCTCTTGCAACTAAGAAGATCCTAAGGGTGTCACCATTGGCCACCCAGTTTTCGGTGTCCATTCTCTGGAAGCTCTGTGACAAGGAAGATGAAGAAGTTCTAGTTGAAACAGTTCAACTTGGAGCTTTTCAGAAGCTCCTAGTTTTGTTGCAGGTGGGTTGTGAAGAAAGCTTGAAGGAGAAGGTCACTGAATTGTTGAAACTGTTGAATGCCTATAGAAACAGAGCGGAATGTGTCGATTCATCCTTGGATTTCAAGTACCTTAAGAAGCCCTTCTAA 1311 0.4699 MVLSGTLRKVFRRAHKVKALPGGELDLEPVIPTHFRCPVSLELMKDPVTLCTGISYDRDSIERWIESGNNTCPVTKQVLSSTHMIPNHAIRRMIQDWCVENQSCGIERIPTPRIPVAPYEVSETCSRIIAATRNGDVKKCQELVGKIKNWGKESERNKRCIVENGACAVLASAFDSFSHGNIEENEVVLEEILGVLPWVMNNHSQEDARSKLRSETCLNCLVWFLNGNDLSARQNAAMVLKEMPVGAIAKTEGVIEALVKMIKEPIGPNATKASLTKIFQLVSSSDDDKERISRRFVELGLVSLLLEAIVDADKSICEKALGVLDCICDCKEGKEVAMANALTLPLATKKILRVSPLATQFSVSILWKLCDKEDEEVLVETVQLGAFQKLLVLLQVGCEESLKEKVTELLKLLNAYRNRAECVDSSLDFKYLKKPF 436
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju07g1299 436 ProSiteProfiles U-box domain profile. 30 104 IPR003613 GO:0004842|GO:0016567
Alju07g1299 436 PANTHER WDSAM1 PROTEIN 28 423 IPR045185 GO:0061630
Alju07g1299 436 Coils Coil 399 419 - -
Alju07g1299 436 CDD RING-Ubox_PUB 32 82 IPR045210 -
Alju07g1299 436 Gene3D - 246 426 IPR011989 -
Alju07g1299 436 SUPERFAMILY ARM repeat 127 413 IPR016024 -
Alju07g1299 436 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 31 104 IPR013083 -
Alju07g1299 436 Pfam U-box domain 31 102 IPR003613 GO:0004842|GO:0016567
Alju07g1299 436 Gene3D - 122 245 IPR011989 -
Alju07g1299 436 SMART Ubox_2 34 97 IPR003613 GO:0004842|GO:0016567
Alju07g1299 436 SUPERFAMILY RING/U-box 27 106 - -
Alju07g1299 436 FunFam RING-type E3 ubiquitin transferase 31 103 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju07g1299 Alju-ChrAlju07 37774595 37775905 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju07g1299 12 436 U-box Gene Family AT5G37490 46.991 3.08e-122 360
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Alju07g1299 07 37774595 37775905 Alju07g1299 07 37774595 37775905 CCT
Alju07g1299 07 37774595 37775905 Alju07g1299 07 37774595 37775905 ECH