Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju07g1120 ATGGATCCTGCTCGCTATGGGCTACATCAAGGCTGGGATAATAACAGCGCTCTTGAGGGTTATGGTGCGGCTCATGAGCCAAATTATCGAGTTGGAGGTTCATATGATGAAAGGAGGTTTATGGATGAAAGGTACTCAAGGGATAATATATACCAGAGAGGTGCCTTTCACCGTGATGGTTTGGATAGGGAGGCATATCCTCCATCAGGACCTGCTGTTGGCCATTGGAGTGAATCCAAACGGAGAGGTTATGGTGAGGACTATTTACTGGACAAGGAATCTAGACGTCTTCAGAGGCCTTATTATGATTCATATCAGCAGATTGATGCTTTCAGAGATAGGGAGGTTGACATGTATCCAGAATTTGAAAAATTTCGCGATGGCTATGCCAGCATTGAAAGCTATGATGATCAAGGATATGATAAACCTGGTAGGTTTGGGGGTCATGATCGGGATGAATATGCATGTGATGATTATGGGTATAGGTCTCGTGCATCCCATCATTATAGGGAGGATAGCCATGATAGGGATATTGATCATGTCCGTCATAGTCATGATTCTGATTATGGGAGAGGTAGAAGAGATAGCAATTGGAGGCGACGTGAATCTCGTGACCGGGAACATGATAGAAGATATCCGAGCAGGGAAAGAGATTTGAGTCCACGTAGGAGGCATGAGCGGTCCCGGTCCCGATCCCATTCTCAGTCTTCGTCTCAATCTCGATCTCGATCCCACTCTCATTCTCATTCACGCTCTCGTTCCCAATCTCATGGATATGACGATCGTCCAAGATCAAGGTCCCCACGAGGTCGAAGTCATGGTCGAAGTTATCGAGAAGACAGCTATCCTGATAGTCGGTATGAGAGAAGTGAAAAGCGAAGGGATCGTGAAGAGAAGAGGCGTGATCATTATTCAGTGGCTCCATCTGCTACTGTTGTTGTTAAAGGTCTTTCACAAAATGCCAACGAAGAAGATCTATACCAGATTCTTGCGGAATGGGGGCCACTTCGGCATGTTCGTGTTATAAAGGAGCGAAATTCTGGCATTTCTCGTGGATTTGCATTTATTGATTTTCCTTCTGTGGGAGCTGCACGGGCAATGATGGACAAACTTGGAGATGATGGTCTTGTCGTGGATGGTAGAAAGCTTTTCTTTGAATATAGTAGTAAGCCAACTGGAGGTCCAGGTGGACCTTTTGGTCAAGAGGGATCTATGAAATCAGGTCATAATCATAAAAGCATTACAGTACCATCTGATTGGATGTGCACCATATGTGGTTACATCAATTTTGCCCGACGAACATCCTGCTATCAGTGTAATGAACCACGAAGTGAGGATGCTCCTGCGGCGGATATTACTTTGTCAAATCCAACAGCCTTGGGAAAGAAAGGATCAGAGGCAGGTCCAACTCATGTATTGGTTGTTCGTGGTTTGGACGAAAATGCTGATGAGGAAATGCTTCGCTATGAGTTCTCCAAACATGCTCCAATTAAGGACCTGCGTCTTGTGAGAGACAAGTTTACTCATGTCTCCAGGGGATTTGCTTTTGTACATTTTTATTCGGTGGAGGATGCCACCAAGGCTCTTGAAGCAACAAATGGAACAACCCTTGAGAAGAACGGACAGATTCTAAGAGTGGCATATGCAAAAAGTATCCTGGGTCCTGGATCAGGAACATCAGGTGCGTCCCAGTCAAGTAGTTTAGCAGCTGCTGCTATTGAGGCCGCGACATTTGCTCAGCAGTATGATTCTGTTGGATGGGCTCCTAAAGAATACAATCCAGATGACAAACAATCTACTGGTCAAGAGCAAACTGGTGCAGCTCAGACAGATGCACTGGCTCCACAAGCGGGCTTTGTTTGGGATGAAGCATCTGGTTATTACTATGATGCTGCTTCAGGGTTTTACTATGATGGGAATACTGGTCTTTACTATGATGGTAATAATGGGATTTGGTATTCTTATGATCACAATACTCAGCAATATATCCCTTGCACTGATCAAACTGAGATTAAAGCGCCTAGTAATCAGTCTGAACCTTCCAAGGTGTCTGGCAGTTCCAGCAGTAAAAAAGTTATTATTTCTGCACCTGCTAGTACTGTTTCATCTGCTGAGAAGCCAGCTTCTTTGGCAGACGCAGTTCAAGCTGCTGCAACTGCTGCCATAGCTGCAGAGAAGAAAGAAAAAGAAAAATTGAAGGAGATAAAGCTTGCTTCCAAGAGCAGTATTCTGGCTAACAAAAAGAAAATGAATAATGTGTTGACAATGTGGAAGCAGAGGAGCCATGAGGGTCAAGCCACTCGTGTAGCTCTGGAAGACAATCACCAATCCACATCCATTGATGATAGGTCTTCTGGATATCCCACAAAGAGCAAGTTCAAGAATGATTTTGCAGATACAAGGGAGAATAATGCGTCCACTTCAGGGATTCCCACTGCCCCTGCTTCTCAGGCTGTTGCTTCTGATTCTCAGGTTCAGCCACGACCTGTTAGTAATAGCCTTGGAGGCACTCTGATGGGGGTTATAAGAGGCTCTGGAAGAGGGATCATTAAATCTGATAGTTCTAACTCAGGACCTACACCTTCAGCTGCTGCATGTGCATCAGGAGCATCTTCATCAACTGTAGATGCTCCGACAGTTGCAACTCCCTTTAGAACAAATGTCTCTGCACTGGGTTCATATGCTACCCCTGCCACTGGTGGAAGTGGCCGAAGAAGGTTTTCAGAAATGCCTCATTCTGCTTCAGCCCCCAAGGAACAACCGCAAACAACCTACAGGGATCGTGCAGCTGAGAGAAGAAGTTTGTATGGTTCATCATTGTCAGTTGGGGATGATTTGGCTGATCTGGAATCTGGGGATCCAAATCGAGATTTTGCATCAAGGAAGGGTGATCCAATGCCTTTCCCTCCTGGGGTTGGTGGAGGACGTGTGGTTGGAGATGCCAACCTTGATACCTATGAGGTGATTACAGCTGACAAAGCAATTGATGAGAACAATGTTGGCAATCGGATGCTCCGCAACATGGGATGGCAAGAAGGCTTGGGCCTAGGTAAGGATGGAAGTGGAATGACAGAGCCTGTCCAGGCACAAGCCGCAGATAGTAGAGCAGGACTTGGAAGCCAGCAGAAAAAGTTGGATCCTAGCCTTGAGGTTCAGGCAGGAGATAGTTACAAGACGCTTATTCACAAGAAAGCACTCGCCAGATTTTGGGAAATGTCGTAG 3222 0.4575 MDPARYGLHQGWDNNSALEGYGAAHEPNYRVGGSYDERRFMDERYSRDNIYQRGAFHRDGLDREAYPPSGPAVGHWSESKRRGYGEDYLLDKESRRLQRPYYDSYQQIDAFRDREVDMYPEFEKFRDGYASIESYDDQGYDKPGRFGGHDRDEYACDDYGYRSRASHHYREDSHDRDIDHVRHSHDSDYGRGRRDSNWRRRESRDREHDRRYPSRERDLSPRRRHERSRSRSHSQSSSQSRSRSHSHSHSRSRSQSHGYDDRPRSRSPRGRSHGRSYREDSYPDSRYERSEKRRDREEKRRDHYSVAPSATVVVKGLSQNANEEDLYQILAEWGPLRHVRVIKERNSGISRGFAFIDFPSVGAARAMMDKLGDDGLVVDGRKLFFEYSSKPTGGPGGPFGQEGSMKSGHNHKSITVPSDWMCTICGYINFARRTSCYQCNEPRSEDAPAADITLSNPTALGKKGSEAGPTHVLVVRGLDENADEEMLRYEFSKHAPIKDLRLVRDKFTHVSRGFAFVHFYSVEDATKALEATNGTTLEKNGQILRVAYAKSILGPGSGTSGASQSSSLAAAAIEAATFAQQYDSVGWAPKEYNPDDKQSTGQEQTGAAQTDALAPQAGFVWDEASGYYYDAASGFYYDGNTGLYYDGNNGIWYSYDHNTQQYIPCTDQTEIKAPSNQSEPSKVSGSSSSKKVIISAPASTVSSAEKPASLADAVQAAATAAIAAEKKEKEKLKEIKLASKSSILANKKKMNNVLTMWKQRSHEGQATRVALEDNHQSTSIDDRSSGYPTKSKFKNDFADTRENNASTSGIPTAPASQAVASDSQVQPRPVSNSLGGTLMGVIRGSGRGIIKSDSSNSGPTPSAAACASGASSSTVDAPTVATPFRTNVSALGSYATPATGGSGRRRFSEMPHSASAPKEQPQTTYRDRAAERRSLYGSSLSVGDDLADLESGDPNRDFASRKGDPMPFPPGVGGGRVVGDANLDTYEVITADKAIDENNVGNRMLRNMGWQEGLGLGKDGSGMTEPVQAQAADSRAGLGSQQKKLDPSLEVQAGDSYKTLIHKKALARFWEMS 1073
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju07g1120 1073 CDD OCRE_SUA_like 614 665 IPR035623 -
Alju07g1120 1073 Gene3D - 454 576 IPR012677 -
Alju07g1120 1073 SMART zf_4 418 442 IPR001876 -
Alju07g1120 1073 MobiDBLite consensus disorder prediction 800 833 - -
Alju07g1120 1073 CDD RRM1_RRM2_RBM5_like 469 549 - -
Alju07g1120 1073 PANTHER RNA-BINDING PROTEIN 204 1069 - -
Alju07g1120 1073 MobiDBLite consensus disorder prediction 1016 1044 - -
Alju07g1120 1073 Pfam G-patch domain 998 1039 IPR000467 GO:0003676
Alju07g1120 1073 MobiDBLite consensus disorder prediction 253 304 - -
Alju07g1120 1073 MobiDBLite consensus disorder prediction 589 609 - -
Alju07g1120 1073 MobiDBLite consensus disorder prediction 774 878 - -
Alju07g1120 1073 SUPERFAMILY RNA-binding domain, RBD 469 558 IPR035979 GO:0003676
Alju07g1120 1073 MobiDBLite consensus disorder prediction 849 878 - -
Alju07g1120 1073 ProSiteProfiles G-patch domain profile. 997 1043 IPR000467 GO:0003676
Alju07g1120 1073 MobiDBLite consensus disorder prediction 133 304 - -
Alju07g1120 1073 ProSiteProfiles Zinc finger RanBP2 type profile. 416 445 IPR001876 -
Alju07g1120 1073 SMART rrm1_1 311 386 IPR000504 GO:0003723
Alju07g1120 1073 SMART rrm1_1 472 547 IPR000504 GO:0003723
Alju07g1120 1073 Gene3D - 414 446 - -
Alju07g1120 1073 MobiDBLite consensus disorder prediction 892 969 - -
Alju07g1120 1073 SUPERFAMILY Ran binding protein zinc finger-like 410 446 IPR036443 -
Alju07g1120 1073 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 471 551 IPR000504 GO:0003723
Alju07g1120 1073 Gene3D - 277 413 IPR012677 -
Alju07g1120 1073 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 312 372 IPR000504 GO:0003723
Alju07g1120 1073 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 473 539 IPR000504 GO:0003723
Alju07g1120 1073 SMART G-patch_5 995 1041 IPR000467 GO:0003676
Alju07g1120 1073 ProSitePatterns Zinc finger RanBP2-type signature. 420 439 IPR001876 -
Alju07g1120 1073 Pfam OCRE domain 616 664 IPR041591 -
Alju07g1120 1073 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 310 390 IPR000504 GO:0003723
Alju07g1120 1073 MobiDBLite consensus disorder prediction 60 79 - -
Alju07g1120 1073 MobiDBLite consensus disorder prediction 138 225 - -
Alju07g1120 1073 SUPERFAMILY RNA-binding domain, RBD 305 407 IPR035979 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju07g1120 Alju-ChrAlju07 34491582 34499018 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju07g1120 976 1042 C2H2 Transcription Factor Family AT5G26610 43.284 3.47e-10 60.8