LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Alju07g0869	ATGTCCGTACAATCCCCAGTGAATAATTCTGCGTCTGATCCAATATTATGCAAAACAATTCGAAGAAGAAGCCATCAAAAGCTCCTCAGAATCATCTTCACCGATCACGATGCTACAGATTCCGACACTTCCAGCGATGAAGATGATGATGCAGAGAAACCTCGGAGACTAGGAAGAGTTAAGAAGCATATCACAGAGATCACTATGAATCTTCCCTCTTCTCATCAATCAGCTTCATCTTCTTCTCTGGCTTGTTTCAAGAAACACGACCGTACTATCTTGAAGAGACCTAAGAAATCTCCGTCTCGATGCTGCCATAACAAATACAGGGGTGTTCGCCGGAGGCCGTGGGGGCGGTGGGCTGCTGAGATCCGAGACCCGACCCGACGGAAACGACTGTGGCTGGGAACATTTGACACGGCGGAGGAAGCAGCCAGCGAGTACGACAAGGCTGCGATCAAGCTCAAGGGTGCTAACGCCGTCACGAACTTCCCTAACTCCGTCGCGACGGAGAGAGAAAAAAGGCCGGTAGCAGTAGTGTACACCCAACAGAGCACTACCGAGGGATTCGCCTCCTTGATGGCGTCTCCGACTTCGGTGCTGGCCTATGACAACGATTATTCTACGGCGGCGGCGGCGTTCGGAGGTTTCTGCTTCGGCGAGGTGGATGCGTTGGGTTTCGATATTGAGATGCCGGTGACGGAGATGAACGTTGTGGTGGGGTTTGATCAGAAGTCGGAGAGTGAAGAATTCGAAGACTTTGACGTGGACGAGTTCTTGACGTGGCCCGACTAG	795	0.517	MSVQSPVNNSASDPILCKTIRRRSHQKLLRIIFTDHDATDSDTSSDEDDDAEKPRRLGRVKKHITEITMNLPSSHQSASSSSLACFKKHDRTILKRPKKSPSRCCHNKYRGVRRRPWGRWAAEIRDPTRRKRLWLGTFDTAEEAASEYDKAAIKLKGANAVTNFPNSVATEREKRPVAVVYTQQSTTEGFASLMASPTSVLAYDNDYSTAAAAFGGFCFGEVDALGFDIEMPVTEMNVVVGFDQKSESEEFEDFDVDEFLTWPD	264

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Alju07g0869	264	ProSiteProfiles	AP2/ERF domain profile.	108	165	IPR001471	GO:0003700\|GO:0006355
	Alju07g0869	264	FunFam	Ethylene-responsive transcription factor 2	107	166	-	-
	Alju07g0869	264	CDD	AP2	108	167	IPR001471	GO:0003700\|GO:0006355
	Alju07g0869	264	SUPERFAMILY	DNA-binding domain	108	167	IPR016177	GO:0003677
	Alju07g0869	264	SMART	rav1_2	108	171	IPR001471	GO:0003700\|GO:0006355
	Alju07g0869	264	PRINTS	Ethylene responsive element binding protein signature	109	120	IPR001471	GO:0003700\|GO:0006355
	Alju07g0869	264	PRINTS	Ethylene responsive element binding protein signature	131	147	IPR001471	GO:0003700\|GO:0006355
	Alju07g0869	264	PANTHER	SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR	26	204	-	-
	Alju07g0869	264	MobiDBLite	consensus disorder prediction	38	59	-	-
	Alju07g0869	264	Pfam	AP2 domain	108	157	IPR001471	GO:0003700\|GO:0006355
	Alju07g0869	264	PIRSF	PTI6	7	264	IPR017392	GO:0003700
	Alju07g0869	264	Gene3D	AP2/ERF domain	107	167	IPR036955	GO:0003700\|GO:0006355

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Alju07g0869	Alju-ChrAlju07	22815704	22816498	Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Alju07g0869	23	203	AP2-EREBP Transcription Factor Family	AT4G27950	47.340	9.96e-38	134

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	AP2/ERF-ERF	Alju07g0869		AP2	4.5e-15	CL0081