Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju07g0859 ATGACGTCAGGAAACCGATGCCACTATGAAGTTCTTGGCCTAGAGCGAGATTGTACTCCTGATGAAATACGGTCAGCATATAGGCGTCTCGCCCTTCAGCGCCACCCTGACAAACTTGTCAAATCTGGCTTATCACAAGCTGAAGCCACAGCTCAATTCCAGGAGCTCCAACATGCCTATGAAGTCCTTTCTGACCCTAAAGAGCGAGCATGGTATGATTCCCACCGGTCTCAGATTCTCTTTTCTGATCCCAACTCAGTTGGAAAGTCAGACCCCAACTCATTCATCCCGAACCTGTTTTCCTTCTTCTCTATAAATGTTTACTCTGGATATTCAGACACTGGCAAGGGATTCTACAAGGTTTATTCTGATGTTTTTGATAAAATTCATGCCAATGAAATTAACTTTGCTAAGAAATTAGGACTAGGCATTGATGTGGTTCGACAAGCCCCAGTAATGGGTAATTTGGACAGCCCTTATACTCAAGTGACAGCCTTCTACAATTACTGGTTGGGATTTTCAACAGTTATGGATTTTTGTTGGGTGGATGAGTATAATGTCATGGCTGGTCCCAATCGGAAGTCAAGGCGTCTTATGGAGGAAGAGAACAGCAAGATCAGAAAGAAGGCAAAGAAAGAGTATAATGACACAGTGCGGAAGTTGGCTGATTTTGTCAAGAAAAGGGATAAAAGGGTGATTGATATGAAGATGAAGAAGAATATGGAGATGGAAAAGAAGAAAGAGGAGGAGAGGGAGAGGAAGAGGCAGATGGAGAAGGAGAAGAAGGAGAGGGCAATGGCATATGAAGAGCCTGAGTGGGCCCAAGTGGAGGAGGATGAAGAAGATGAGGCTGATTGGTTTGAGGAGGGGAGTAAGAAGAAGAATGCTGAGAATGAGTTTTATTGTGTACTGTGTGGTAAGAAGTTCAAGAGTGAGAAGCAATGGAAGAACCATGAGCAATCGAAGAAGCATAAGGAGAAAGTTGCAGAATTTAGGGATTCACTTGATGATGAAGAGGATGTGGAGGTAGAGTTGGAAGAAGTGGAGGTGGAAGAAAGAGAAGGAAAGCTTAGCTCTGAAAGTTATGAAGACAAAATTGGGGTGAGTGATGATATATCTGGGAGCACTGATAATGAGATTGACGATTTAGAAGGGGGAATTAGAGATGGTCTCAATGTTGCAGAGGAGGTGACAGCAAATGGGGTTGAGTGGAATGAAAACGAAGAAGAGGAAGAAGAATATCTCAAAGCCCAGCATCCAGAGGTGGAGGAGGCTGGCATTTCAGTGGATTTTGATGGAGAAGAAGATGATGAATTGGGTGTCCTTGAAGCAATGCTGGCTGGGAAAAGGAGCAGAAAAACTGGTGCCTCAAGGCAGGACCACAAGGCTTCAGTGAATACATCTCAAAATGATACTGAGAGCGATGAGGTTGGTTTTATGGAATATGACAACAGAAAGAGTTCAAAAAAGAAACGTGGAGCTAAAAAAGAGAAAGGAAGAAAACAGAGTGAAGAATTGAAGGCGACTACTAGTAACAGTGATTTTCAGAATGAAAAAAATATTAACGGTGAAGCATCTCAGGCGGAAGACTCTTCTCCACATAATGTGGGAAACGAGAATAATGGTACAGAAAAGGAGCAGTTCCATAGAGATAAGAAGGCTTCTACTCAACGTAATGATAAAAAAGGAGCTGCAAAGAATACAATGGCCAATGGAAAAAATTGCTCCAAAACAAGAAAAGCCAAGGGTGCATCAAAGAATCTTGCCAATATATGCGAGGCTTGTGGAGAGGAGTTTGAATCAAGGAATCAATTGCATAAACATCTCGGGGAAACCGGACATGCGACAATAAAATCCACAAGGAGGCATCGCTAG 1875 0.4283 MTSGNRCHYEVLGLERDCTPDEIRSAYRRLALQRHPDKLVKSGLSQAEATAQFQELQHAYEVLSDPKERAWYDSHRSQILFSDPNSVGKSDPNSFIPNLFSFFSINVYSGYSDTGKGFYKVYSDVFDKIHANEINFAKKLGLGIDVVRQAPVMGNLDSPYTQVTAFYNYWLGFSTVMDFCWVDEYNVMAGPNRKSRRLMEEENSKIRKKAKKEYNDTVRKLADFVKKRDKRVIDMKMKKNMEMEKKKEEERERKRQMEKEKKERAMAYEEPEWAQVEEDEEDEADWFEEGSKKKNAENEFYCVLCGKKFKSEKQWKNHEQSKKHKEKVAEFRDSLDDEEDVEVELEEVEVEEREGKLSSESYEDKIGVSDDISGSTDNEIDDLEGGIRDGLNVAEEVTANGVEWNENEEEEEEYLKAQHPEVEEAGISVDFDGEEDDELGVLEAMLAGKRSRKTGASRQDHKASVNTSQNDTESDEVGFMEYDNRKSSKKKRGAKKEKGRKQSEELKATTSNSDFQNEKNINGEASQAEDSSPHNVGNENNGTEKEQFHRDKKASTQRNDKKGAAKNTMANGKNCSKTRKAKGASKNLANICEACGEEFESRNQLHKHLGETGHATIKSTRRHR 624
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju07g0859 624 MobiDBLite consensus disorder prediction 315 334 - -
Alju07g0859 624 SUPERFAMILY Chaperone J-domain 4 101 IPR036869 -
Alju07g0859 624 Pfam Zinc-finger double-stranded RNA-binding 300 325 IPR022755 -
Alju07g0859 624 ProSiteProfiles dnaJ domain profile. 7 76 IPR001623 -
Alju07g0859 624 MobiDBLite consensus disorder prediction 450 583 - -
Alju07g0859 624 MobiDBLite consensus disorder prediction 543 560 - -
Alju07g0859 624 ProSitePatterns Nt-dnaJ domain signature. 53 72 IPR018253 -
Alju07g0859 624 SUPERFAMILY beta-beta-alpha zinc fingers 294 341 IPR036236 -
Alju07g0859 624 SMART ZnF_U1_5 297 331 IPR003604 GO:0003676|GO:0008270
Alju07g0859 624 MobiDBLite consensus disorder prediction 272 286 - -
Alju07g0859 624 MobiDBLite consensus disorder prediction 561 575 - -
Alju07g0859 624 Gene3D Classic Zinc Finger 288 346 - -
Alju07g0859 624 MobiDBLite consensus disorder prediction 335 349 - -
Alju07g0859 624 PRINTS DnaJ domain signature 27 42 IPR001623 -
Alju07g0859 624 PRINTS DnaJ domain signature 9 27 IPR001623 -
Alju07g0859 624 PRINTS DnaJ domain signature 48 68 IPR001623 -
Alju07g0859 624 MobiDBLite consensus disorder prediction 242 290 - -
Alju07g0859 624 MobiDBLite consensus disorder prediction 315 420 - -
Alju07g0859 624 Coils Coil 233 267 - -
Alju07g0859 624 ProSiteProfiles Zinc finger C2H2 type domain profile. 590 619 IPR013087 -
Alju07g0859 624 SMART dnaj_3 6 68 IPR001623 -
Alju07g0859 624 SMART c2h2final6 590 614 IPR013087 -
Alju07g0859 624 SMART c2h2final6 300 324 IPR013087 -
Alju07g0859 624 MobiDBLite consensus disorder prediction 242 271 - -
Alju07g0859 624 MobiDBLite consensus disorder prediction 508 542 - -
Alju07g0859 624 MobiDBLite consensus disorder prediction 350 367 - -
Alju07g0859 624 ProSiteProfiles Zinc finger C2H2 type domain profile. 300 329 IPR013087 -
Alju07g0859 624 CDD DnaJ 7 65 IPR001623 -
Alju07g0859 624 Pfam DnaJ domain 8 73 IPR001623 -
Alju07g0859 624 PANTHER DNAJ PROTEIN JJJ1 HOMOLOG 3 619 IPR044648 -
Alju07g0859 624 MobiDBLite consensus disorder prediction 460 475 - -
Alju07g0859 624 ProSitePatterns Zinc finger C2H2 type domain signature. 302 324 IPR013087 -
Alju07g0859 624 Gene3D DnaJ domain 1 88 IPR036869 -
Alju07g0859 624 ProSitePatterns Zinc finger C2H2 type domain signature. 592 614 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju07g0859 Alju-ChrAlju07 22168571 22171659 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju07g0859 6 619 C2H2 Transcription Factor Family AT1G74250 50.228 2.46e-178 518
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Alju07g0859 DnaJ 6e-22 CL0392