Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju07g0778 ATGCGCACCAAAGATGGTAAGAGTCGGCAATTTGGTTTTATTGGTTTTCATACAGAGGATGAAGCCAATGAAGCTATAAAATATTTCAATAGATCCTACCTTGACACCTGTAGAATCACTTGTGAGGTGGCTCGAAAAGTTGGTGATCCGGATATTCCTTGTCCATGGAGTCGACATTCATTGAGGAAAGGGGAGAAAGTGATCCAAGGTGGGAAGAAAGATGCTGAAACTAGAAGTAGTGCTAAGGCACAAAGAGGTGGAGAGAATTTGAAGGAGAGCGCTGACATTGATGATCCACAGCTTCAAGAATTCCTTCAGGTTATGCAGCCTCGGGCCAAGTCAAAATTGTGGGCTAATGATGCATTATCAGTGTTGGATAACGTTAGTGAGAAGCAAAAATTAGCTGAGAATGAAATCAAGGGTCTTTCAGTTCCAAAGCATGATGAGTTACCTCAAAGTGGCTCATTGGATGATGGGTCTTCAGATGGCTCATTAGATGATGGGTCCTCAGATGGTCATGAATCTGAGAAACCAAATAATATTGTCCATGATGATGCCATTTCAGATATGGAATATTTCAAGAGTCGGGTGACAAAGGAGTGGTCTGATTCTGAAAATAGTGATGATGATGAAGAAAACAAAGCCTCTGTGAGCAATGATGACGAGAACAAAGAAGGCAATGATAGTCATGCTGATGAAGATGAAGAAAATTGTGATGATAAATCTTTGAAAGGAACTGGAAGAGGTGATGCTCAAAATTTAGACCTGTCAGGCCAAGAAGATATCTGTAGTGAGGATAGTGACCATGGAAAGGTTGAAGTGAGAGGCCCTTCTAGTCCTTCTGGCGATGAAGTACCTGAGCAAGGGGTCCCTTCATCATGTCCGGAAAATGAGAAAGGAGTTTTTGAGTCTTCTCGACTGTTTGTCCGCAATCTGCCATATACAGCCAATGAGGAGGAACTTGAAGAACACTTCAGCAAGTTTGGCACTGTCTCACAGGTTCATCTAGTTGTTGATAAAGATACAAAAAGGTCCAAAGGAATAGCTTATATTCTTTACACACTTCCAGAATTTGCAGCCAGGGCACTAGAAGAGTTGGACAATTCAATCTTTCAAGGAAGATTACTGCATATTTTGCCAGCCGTGCAAAGACCTTCAGACATCAAGGAAAAGAATACATCAATGGACCAAAGCTCCAGAACATTTAAGAAACAGAGAGAGGAGGAGCGGAAAGCAGCTGAAGCTAGTGGAGATACCAGAGCATGGAATAGTTTATTCATGCGCTCTGACACTGTTGTTGAAAACATTGCTCGTAAATATGGTGTAAGTAAAAGTGATTTGCTTGACCGAGAAGCTGATGACCTTGCTGTGCGCATTGCTTTGGGGGAAACTCAAGTGATTGCAGAGACAAAAAAGGCCCTTAAGAATGCTGGCGTGAATGTGGTGTCTTTGGAGGAATTTGCCAATGGCCAAAAAGTTGGTGTGAAAAGAAGCAACCATGTACTTTTAGTGAAGAACTTGCCATATGGTTCCTCAGAAAATGAATTAGCAAAGATGTTTGGGAAATTTGGGAGTTTGGATAAAATAATTCTGCCTCCAACAAAGACGTTGGCCTTGGTTGTCTACCTTGAACCAGCTGAAGCTCGAGCAGCTTTTAGAGGTTTAGCGTACAAGCGTTTTAAAGATGCACCATTGTATTTGGAATGGGCTCCATCCAATGTACTTAGCCAAAGTTTAACATCTGAGAGCAATGAAAAGAGTGGCGCAATTGGTGAAAATGAGGTCAAACGGATGAAACTGGAACAATATCTTAAGGGAGTATCAGATGGGGACATCGATCAGGACAGAGTTGAGGCCCGGTCTCTGTTTGTCAAGAACATCAACTTTAGGACATCAGATGAGAGTTTGAAGAATCATTTTAGTGAACACGTGAAAGAGGGAAGAGTTTTGAGTGCCAAGGTGAAGAAGCATTTGAAAAATGGAAAACAAGTTTCGATGGGATTTGGATTTATCGAATTTGATTCTGTGGAGACCGCTACGAATATTTGCAGAGATTTACAGGGGACTGTTTTGGATGGGCATGCACTTATTTTACAACTCTGTCATGCCAAGGACAGACAAGTACCAAAAACAGTTGAGAAGGACAAAAGCTCAACAAAATTACTTGTCAGAAATGTAGCATTTGAGGCGACAGAGAAAGAATTGAGACAGTTGTTCAGCCCATTCGGCCAGATTAAGAGTTTGAGGTTGCCAATGAAGTTTGGAAGTCATAGAGGTTTTGCTTTTGTGGAGTATGTTACACAGCAAGAGGCACAAAATGCACTTAATGCTCTTTCAAGCACCCACTTGTACGGCAGGCATCTGGTGTTGGAGAGAGCAAAGGAAGGTGAGAGTTTGGAGGAACTACGGGCTCGAACAGCCGCACAATTTAGTGATGAGCAAAATGGATTTCTAAAGTTATCCAAGAAAAGGAAGCTCTTGTCAATCTCGGACGGAGGGAAGATGGAGTTTGAAAGAATTGCTGATTAG 2529 0.4195 MRTKDGKSRQFGFIGFHTEDEANEAIKYFNRSYLDTCRITCEVARKVGDPDIPCPWSRHSLRKGEKVIQGGKKDAETRSSAKAQRGGENLKESADIDDPQLQEFLQVMQPRAKSKLWANDALSVLDNVSEKQKLAENEIKGLSVPKHDELPQSGSLDDGSSDGSLDDGSSDGHESEKPNNIVHDDAISDMEYFKSRVTKEWSDSENSDDDEENKASVSNDDENKEGNDSHADEDEENCDDKSLKGTGRGDAQNLDLSGQEDICSEDSDHGKVEVRGPSSPSGDEVPEQGVPSSCPENEKGVFESSRLFVRNLPYTANEEELEEHFSKFGTVSQVHLVVDKDTKRSKGIAYILYTLPEFAARALEELDNSIFQGRLLHILPAVQRPSDIKEKNTSMDQSSRTFKKQREEERKAAEASGDTRAWNSLFMRSDTVVENIARKYGVSKSDLLDREADDLAVRIALGETQVIAETKKALKNAGVNVVSLEEFANGQKVGVKRSNHVLLVKNLPYGSSENELAKMFGKFGSLDKIILPPTKTLALVVYLEPAEARAAFRGLAYKRFKDAPLYLEWAPSNVLSQSLTSESNEKSGAIGENEVKRMKLEQYLKGVSDGDIDQDRVEARSLFVKNINFRTSDESLKNHFSEHVKEGRVLSAKVKKHLKNGKQVSMGFGFIEFDSVETATNICRDLQGTVLDGHALILQLCHAKDRQVPKTVEKDKSSTKLLVRNVAFEATEKELRQLFSPFGQIKSLRLPMKFGSHRGFAFVEYVTQQEAQNALNALSSTHLYGRHLVLERAKEGESLEELRARTAAQFSDEQNGFLKLSKKRKLLSISDGGKMEFERIAD 842
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju07g0778 842 CDD RRM6_RBM19_RRM5_MRD1 719 793 - -
Alju07g0778 842 MobiDBLite consensus disorder prediction 387 415 - -
Alju07g0778 842 MobiDBLite consensus disorder prediction 211 226 - -
Alju07g0778 842 CDD RRM5_RBM19_like 621 701 IPR034423 -
Alju07g0778 842 CDD RRM4_RBM19_RRM3_MRD1 500 571 - -
Alju07g0778 842 Gene3D - 616 714 IPR012677 -
Alju07g0778 842 SMART rrm2_1 621 699 IPR003954 GO:0003676
Alju07g0778 842 SMART rrm2_1 306 379 IPR003954 GO:0003676
Alju07g0778 842 MobiDBLite consensus disorder prediction 389 415 - -
Alju07g0778 842 MobiDBLite consensus disorder prediction 65 97 - -
Alju07g0778 842 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 620 703 IPR000504 GO:0003723
Alju07g0778 842 CDD RRM3_RBM19_RRM2_MRD1 306 379 - -
Alju07g0778 842 MobiDBLite consensus disorder prediction 167 203 - -
Alju07g0778 842 SUPERFAMILY RNA-binding domain, RBD 497 583 IPR035979 GO:0003676
Alju07g0778 842 Gene3D - 194 394 IPR012677 -
Alju07g0778 842 FunFam Multiple RNA-binding domain-containing protein 1 491 593 - -
Alju07g0778 842 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 719 795 IPR000504 GO:0003723
Alju07g0778 842 MobiDBLite consensus disorder prediction 65 81 - -
Alju07g0778 842 SMART rrm1_1 621 699 IPR000504 GO:0003723
Alju07g0778 842 SMART rrm1_1 720 791 IPR000504 GO:0003723
Alju07g0778 842 SMART rrm1_1 306 379 IPR000504 GO:0003723
Alju07g0778 842 SMART rrm1_1 501 568 IPR000504 GO:0003723
Alju07g0778 842 SUPERFAMILY RNA-binding domain, RBD 285 393 IPR035979 GO:0003676
Alju07g0778 842 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 622 696 IPR000504 GO:0003723
Alju07g0778 842 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 502 564 IPR000504 GO:0003723
Alju07g0778 842 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 721 788 IPR000504 GO:0003723
Alju07g0778 842 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 307 377 IPR000504 GO:0003723
Alju07g0778 842 PANTHER TRANSFORMER-2 SEX-DETERMINING PROTEIN-RELATED 306 406 - -
Alju07g0778 842 SUPERFAMILY RNA-binding domain, RBD 714 797 IPR035979 GO:0003676
Alju07g0778 842 Gene3D - 715 816 IPR012677 -
Alju07g0778 842 Gene3D - 492 596 IPR012677 -
Alju07g0778 842 Gene3D - 1 93 IPR012677 -
Alju07g0778 842 SUPERFAMILY RNA-binding domain, RBD 608 706 IPR035979 GO:0003676
Alju07g0778 842 FunFam Multiple RNA-binding domain-containing protein 1 713 819 - -
Alju07g0778 842 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 305 383 IPR000504 GO:0003723
Alju07g0778 842 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 500 572 IPR000504 GO:0003723
Alju07g0778 842 FunFam Nucleotide/nucleic acid binding protein 616 710 - -
Alju07g0778 842 SUPERFAMILY RNA-binding domain, RBD 4 50 IPR035979 GO:0003676
Alju07g0778 842 MobiDBLite consensus disorder prediction 139 298 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju07g0778 Alju-ChrAlju07 13188041 13204070 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju07g0778 611 811 Eukaryotic Initiation Factors Gene Family AT1G49760 27.700 1.43e-11 66.2