Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju07g0760 ATGACGTCAGCAAGTCTCTCTTCGCCTGTGGCTTCTGCCGTACAATCCATCCGCCGTTCATTGACTGATCTCTGCGACCGCGAACACCATTACTTATTCGAGAACCCCCGACGGTTCTCGGGCTTGGCCCGGCGACTTCAGCTTGTCGTCAACCAGCTACTCCTGTCGTTTCAATCACCGTCGCCGGATACCTTCCCGACGTCGGTGCAGACCGCCCTGAAAGGAATGTCCGGCGATCTGTCGAAGGCTGCAGAAATTATTTCCGTTTATGAGAAAAGTAGCAAGATATTTGTCTTGATCAACTGCAAGTCACTCTGCTTATCCCTTGAGAAGCACAGTTCCTCCGTAGGAGGATGGCTCGCCTTGCTCGATGAGGCTCTTCATGACGACCCTGACCTCCAAAAGAAAGCTTCTGATCTCTCCAGAGACATGAAGCTCGCTCAGTTCAGAGTTACAGAGAACGAAGAGAGAGTTCATTGTACGCTGGAAAAAGAAGGGCTAGGAAGACCTACCACCAAGGCGGTGCAGAGTGCTATTGTCATGGATTTGGCTCGCGCTATGGGGATTGACCCAAGCGATCATTCAGAGTTGTCTAAAGAAATAAAGCTATTTAAGAATGACCTATTGCGCTCAAGTTCTGTATCTGAACGGCGGATTTTAGTTTCCCTTGAAAGGATTTTGAATAATTGGTCTATTGAACCTAACATTGAGACACGAAAATTGGACTTCGACCTTGAAGACAATGCAGCGATGTCTCCCTTCAAAAATTTTCTTTGCCCATTGACAAAGGAAGTGATGAAGAATCCTGTGGTTCTTGAAACTTCTCAGACCTATGAACGGACTGCTATAGAGTACTGGTTCGAGAGATGTATTCAAGATGCTCGTGACCCAACTTGTCCTGTAACTGGGAAGGTTCTTAAATCCTTGGAACTCAAACCCAATATTGGATTGGCTGGGGCAATAGAAGAGTGGGTTAACAGGGTTGTGGAGTATCAAGTTAAATCTGCTGCTGAACACTTGACTGAGGAGCCACTTTGTATAGATCACGTTGAGCAAGCTTTAGATAACATTAATAGGGTTTCAGAAGACCATCCTCCTAGCAGATATGTAATCAAGAATGCTGGAATTATACAAATGATAGTGAAGCTTCTTACTAATAGCTCAAAAGTTATTGGATCACGGTTGAGAAGTAAAGCTTTTATGACTTTAGTTAGTATGGCTAAAGATGAAGAAAGCAAGAAAATAATGCTTGAAGGGAGTATCACAAGATTGGCGGTACATAGTCTTACTGGTAGCTCAGAGAAAGAGAGGGAGTATGCTGTGAAGTTATTGCTAGAGTTCTGCAGCGATGAAGCTTATTGCATAGGAGTTGCATCAGAGAAAGGTGCGTTGGTTCTCCTCACAAGTATGGCAGGAAATCTAGAGTTTCCTGCTTTGTCCAAGTTAGCTGAGGAAGTCTTAAGGCAGTTGGAGAGGGTGGAGGATAATGTGCAACGTTTAGCAGCATCTGGAAGATTTGAACCTTTACTTTTACGGTTGCATGGTGGTCCTGATGCTGTAAAGATAGAGATGGCGTCTCTGCTCGGAAGGATGACCTTGACAAACAACAATAAAGAGCAAATTGCTAGGCAAAGTGCTGGAGTACTAGTTGACCTGTTGTCGAAGCCAGAAGGAAGAGAACCAAGTCTGCAAGCATTATATAACTTGTCAGGATTGGATGACAACGCAACCATCCTTGTCGAGTCTCCAGTCTTTCCATCTCTTATTAATGTTCTTTTTGATGACCAGGAGCCCTCAAATGAAATTAAAACATTAGCTGCTTCAACAATTGCAAATATAGTATCGAAGCCAGGGCGTTGGGAATTAGCATCTGCCGACATGAAGGGGAGTTCAATGCAGTCAGAAAATATAGTTTTCAGACTTCTGCAACTGTTAAACTCAGTGTCATCTGAGTGTCAAGTATATGTTCTTCGCATTCTCTATGGAATAACATCATCCCCACAGGCGTCAGAGTCAGTAGCTTTGCATATAAAATCTGGGGATGGCTTTAAAACGGTCACACAATTTCTTGAAAACCCAGAAGTTGAACTCAGAATATATGCTTTCAAGCTTTTGGGACTACTATCTGAACTGTTCAGTCAAGATCTGGGAAATGAGCTGAGACTTTCCAACAAGCTTACCATCCTCAAAGAAAAAATGTTGGATGATCAATCTGCGGAGGAAGAGAGAGCAACTGCGGCATGCATATTTGCCAACCTTTCCTTAACAGAGAATGAAGTAAAATCACTTTTGGGAGGTGATTTCATTAAATGGATCGTCGCCACTCTCAAGAACCAGAGACGCAGCTCCAATGCAAGGATCTCACAGACTGCAGCAAGCTTTTTGGAAGGTCTTCTTGGTCTCTTACTTCACTTCACTAGGAACCTTGACGAGCAAACCCTTACCATTATCAGAGAAAATCGTCTTATGACCATTTTCTGTGAACAGCTGGAATATGCTTCCAAACCAAAGGTAAAAAGACTTGCTGCCCTTGGATTAAAAAGCTTATCAGAAATTGGAAGGACAGTTATTTCTAGAGACACTGAACTCTCACCTTCTGGATTCTTCTCTTCCTTCTTGTTCATCTGTGGGAGGACCTCTAATCAGAACCTTTCGTGTCCGATTCACGACAGTCCCTGCGAGGAAGATAGTCAATTGTGCCTGCTAAAGAGCAATTGTATAAAGCCTCTAAATGATCTCCTCAGTGATACCAATGAAACTAGTGTTCAAATTGCGGCAGTGGAGGCACTTTCAACACTATTATTGGATTGTTCATCGAATAGTTTCAAGAGAGCAGCTGATGAGCTTGAGCAATTGGGTGTGGTTGATTCTGTGATCAGTCTTTTCACAGAGGTAAGATCTGGGGAGCTTCAAGAGAAGACAGTTTGGATCATAGAGAAAATATTGAGAGAGGAAAATCACATACCTAAGTACTCACTTAATCAGTCTCTTGTGAGGGGCTTAGTTGAAGCCTTTAAGCATGGCAATCCCAACACCAAGGTGCTGGCTCAACATGCTTTAACTTGCCTAAAGCAAATATCTGTTCTAAGTGAGAAGGCATCAAGCCAACCTCGAGCTAGGAGGTAG 3126 0.4347 MTSASLSSPVASAVQSIRRSLTDLCDREHHYLFENPRRFSGLARRLQLVVNQLLLSFQSPSPDTFPTSVQTALKGMSGDLSKAAEIISVYEKSSKIFVLINCKSLCLSLEKHSSSVGGWLALLDEALHDDPDLQKKASDLSRDMKLAQFRVTENEERVHCTLEKEGLGRPTTKAVQSAIVMDLARAMGIDPSDHSELSKEIKLFKNDLLRSSSVSERRILVSLERILNNWSIEPNIETRKLDFDLEDNAAMSPFKNFLCPLTKEVMKNPVVLETSQTYERTAIEYWFERCIQDARDPTCPVTGKVLKSLELKPNIGLAGAIEEWVNRVVEYQVKSAAEHLTEEPLCIDHVEQALDNINRVSEDHPPSRYVIKNAGIIQMIVKLLTNSSKVIGSRLRSKAFMTLVSMAKDEESKKIMLEGSITRLAVHSLTGSSEKEREYAVKLLLEFCSDEAYCIGVASEKGALVLLTSMAGNLEFPALSKLAEEVLRQLERVEDNVQRLAASGRFEPLLLRLHGGPDAVKIEMASLLGRMTLTNNNKEQIARQSAGVLVDLLSKPEGREPSLQALYNLSGLDDNATILVESPVFPSLINVLFDDQEPSNEIKTLAASTIANIVSKPGRWELASADMKGSSMQSENIVFRLLQLLNSVSSECQVYVLRILYGITSSPQASESVALHIKSGDGFKTVTQFLENPEVELRIYAFKLLGLLSELFSQDLGNELRLSNKLTILKEKMLDDQSAEEERATAACIFANLSLTENEVKSLLGGDFIKWIVATLKNQRRSSNARISQTAASFLEGLLGLLLHFTRNLDEQTLTIIRENRLMTIFCEQLEYASKPKVKRLAALGLKSLSEIGRTVISRDTELSPSGFFSSFLFICGRTSNQNLSCPIHDSPCEEDSQLCLLKSNCIKPLNDLLSDTNETSVQIAAVEALSTLLLDCSSNSFKRAADELEQLGVVDSVISLFTEVRSGELQEKTVWIIEKILREENHIPKYSLNQSLVRGLVEAFKHGNPNTKVLAQHALTCLKQISVLSEKASSQPRARR 1041
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju07g0760 1041 Coils Coil 483 503 - -
Alju07g0760 1041 SMART arm_5 893 935 IPR000225 GO:0005515
Alju07g0760 1041 SMART arm_5 809 851 IPR000225 GO:0005515
Alju07g0760 1041 SMART arm_5 942 983 IPR000225 GO:0005515
Alju07g0760 1041 SMART arm_5 534 571 IPR000225 GO:0005515
Alju07g0760 1041 SMART arm_5 572 615 IPR000225 GO:0005515
Alju07g0760 1041 SMART arm_5 364 408 IPR000225 GO:0005515
Alju07g0760 1041 Gene3D - 340 853 IPR011989 -
Alju07g0760 1041 PANTHER RING-TYPE E3 UBIQUITIN TRANSFERASE 17 1030 - -
Alju07g0760 1041 Pfam U-box domain 256 326 IPR003613 GO:0004842|GO:0016567
Alju07g0760 1041 SUPERFAMILY RING/U-box 251 327 - -
Alju07g0760 1041 Gene3D - 882 1035 IPR011989 -
Alju07g0760 1041 ProSiteProfiles U-box domain profile. 252 331 IPR003613 GO:0004842|GO:0016567
Alju07g0760 1041 SMART Ubox_2 256 324 IPR003613 GO:0004842|GO:0016567
Alju07g0760 1041 CDD RING-Ubox_PUB 257 311 IPR045210 -
Alju07g0760 1041 SUPERFAMILY ARM repeat 641 1023 IPR016024 -
Alju07g0760 1041 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 243 339 IPR013083 -
Alju07g0760 1041 SUPERFAMILY ARM repeat 347 669 IPR016024 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju07g0760 Alju-ChrAlju07 12537700 12542515 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju07g0760 254 1030 U-box Gene Family AT1G20780 29.950 2.89e-89 302