Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju07g0736 ATGAATCCTTTAACCCTAGTGAAGCGAATTCAGAATATCAATTCCAAAGAAGCTTCTCTGGGCATCAGCGACGAGGCTTCCTGGCACGCCAAGTACAAAGATTCTGCTTATGTATTCATCGGCGGCATCCCCTTCGATCTAACCGAGGGTGATCTTCTGGCAGTTTTTGCTCAATACGGGGAAGTTGTTGATGTAAATCTTGTTAGGGACAAAGGTACTGGGAAATCGAAAGGTTTTGCATTTCTTGCATATGAAGATCAAAGAAGCACAAATCTGGCTGTAGATAATTTGAATGGAGCACAGATTTTGGGTCGAGTCATTCGAGTTGATCACGTCACTAAATACAAAAAGAAAGAAGAGGAAGATGAAGAGACAGAGAGGAAGAAAAGGGAGGAACGAGGTGTTTGCCGAGCTTTCCAAAGAGGTGAATGCACACGTGGAGCTAGCTGCAAATTTTCTCATGATGAGCGAAGAGCTGCGAACACAGGTTGGGGGGCCCCTGAGGATGCTAGTTCAAAGTGGGGTCATGAAAAATTTGACGGTCACATAAAAGAAAGAGATTTACATTCTGAAGCTAAAAAATCAAGAAGGAGAAGTGATGATGATATGGAACTCGAGCAAAGAGATCGTCATATGAGGGAAGACACTTGGTCAAGGAAGCCAGATAATGATGAGTTTGAAGCCAGGACCAAAGATTCTGACAAAAGGGAAGAAAAGAGGCACAAGAGACAGTATGATGATGATGATTTTGGTAGTAGATCAAGGGAAGATCATATCAGCAGGGAAGAGAGGAGGTCAAGGCAAAGAGACTACGATTCTTCATCAAGGTCAAGAGATGATTATGATAGGAAGCTTGGGGACAGATCAAACAAACATGATACAGATAGATCAGAGCCAAAAGAAAAATATGATTTTGACAGGAGAGAAGAAAAGAGATCAAGAAGGTGA 948 0.423 MNPLTLVKRIQNINSKEASLGISDEASWHAKYKDSAYVFIGGIPFDLTEGDLLAVFAQYGEVVDVNLVRDKGTGKSKGFAFLAYEDQRSTNLAVDNLNGAQILGRVIRVDHVTKYKKKEEEDEETERKKREERGVCRAFQRGECTRGASCKFSHDERRAANTGWGAPEDASSKWGHEKFDGHIKERDLHSEAKKSRRRSDDDMELEQRDRHMREDTWSRKPDNDEFEARTKDSDKREEKRHKRQYDDDDFGSRSREDHISREERRSRQRDYDSSSRSRDDYDRKLGDRSNKHDTDRSEPKEKYDFDRREEKRSRR 315
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju07g0736 315 SUPERFAMILY CCCH zinc finger 132 155 IPR036855 GO:0046872
Alju07g0736 315 CDD RRM_ist3_like 27 112 IPR045844 GO:0000398|GO:0003723
Alju07g0736 315 SMART c3hfinal6 132 156 IPR000571 GO:0046872
Alju07g0736 315 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 36 114 IPR000504 GO:0003723
Alju07g0736 315 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 135 155 IPR000571 GO:0046872
Alju07g0736 315 SUPERFAMILY RNA-binding domain, RBD 27 116 IPR035979 GO:0003676
Alju07g0736 315 Gene3D - 133 196 - -
Alju07g0736 315 Gene3D - 26 132 IPR012677 -
Alju07g0736 315 FunFam Zinc finger CCCH domain-containing protein 25 26 130 - -
Alju07g0736 315 SMART rrm1_1 37 110 IPR000504 GO:0003723
Alju07g0736 315 MobiDBLite consensus disorder prediction 156 175 - -
Alju07g0736 315 ProSiteProfiles Zinc finger C3H1-type profile. 130 157 IPR000571 GO:0046872
Alju07g0736 315 PANTHER RNA-BINDING MOTIF PROTEIN, X-LINKED 2 1 237 - -
Alju07g0736 315 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 38 108 IPR000504 GO:0003723
Alju07g0736 315 MobiDBLite consensus disorder prediction 180 315 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju07g0736 Alju-ChrAlju07 11641167 11643509 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju07g0736 24 128 Eukaryotic Initiation Factors Gene Family AT3G16380 31.429 2.57e-06 47.0
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Alju07g0736 07 11641167 11643509 Alju07g0736 07 11641167 11643509 ECH