Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju07g0714 ATGGATATTCTGTCATCGTCATCATCATCTTCACATATCTCCAATAATCCCACTTGGCTAATTCAAGACGCCATGAACACAACAACTACAAAATGGACTCCATCAGAGAACAAAATGTTCGAGAATGCTCTCGCCGTGCACGATAAAGACACACCAGATCGGTGGGTGAAAGTTGCAGCAATGATTCCAGGGAAGACAGTAGGAGATGTGATTAAGCAGTACAGAGAATTAGAAGAAGATGTTAGTAACATAGAAGCTGGATTGGTCCCAATTCCAGGTTATTATAATAGTAGTAGCACCGCCGCCGCCGCCGCCGCCACGACGACGACCTCGCATCATCAATTCACCTTAGATTGGGTTAATTCTTCTGGATTTGATGGCTTCAAATCACATGGTGGAAAGAGATCCTCATCCTCTTCAGCAGGAAGACCACCTGAACAAGAAAGAAAGAAAGGTGTCCCATGGACAGAAGAAGAACACAAACTGTTTCTGCTGGGATTGAAGAAGTATGGGAAAGGTGATTGGAGGAACATATCGAGGAATTTCGTGGTTACTCGGACGCCGACTCAGGTGGCAAGCCACGCGCAGAAGTACTTCATAAGGCAACTTTCAGGAGGGAAAGACAAGAGAAGAGCAAGCATTCATGATATAACAACAGTGAATCTGTCAGAAACCACAAGAGCACCACCTTCTTTAGAAGACATCAAAAATGGAGGTAACTCGAAGCAGGATCAGGCAAATCCAAGTGCTGTTTCTGCTTTAGGTCAAGCACATTTTCAATGGAATCAGCAGGCAACAAATGCAGCAGCTATGGGATTTAATATTCCTTATGGGGTTAATAATAATAACTCTTATGGGATAAAAGTGCAGGGCCAAAATCTGCATACAAGTGCTCTTCTTAATAATCATCATGATTCTTCTTCTTACTTTGGATCACCTCAAACTCAGAACAATATGGTTTTCCAAATGCATAATTCTGCTTCTGCTCACCACTTTTCTCATGCTTGA 1008 0.4276 MDILSSSSSSSHISNNPTWLIQDAMNTTTTKWTPSENKMFENALAVHDKDTPDRWVKVAAMIPGKTVGDVIKQYRELEEDVSNIEAGLVPIPGYYNSSSTAAAAAATTTTSHHQFTLDWVNSSGFDGFKSHGGKRSSSSSAGRPPEQERKKGVPWTEEEHKLFLLGLKKYGKGDWRNISRNFVVTRTPTQVASHAQKYFIRQLSGGKDKRRASIHDITTVNLSETTRAPPSLEDIKNGGNSKQDQANPSAVSALGQAHFQWNQQATNAAAMGFNIPYGVNNNNSYGIKVQGQNLHTSALLNNHHDSSSYFGSPQTQNNMVFQMHNSASAHHFSHA 335
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju07g0714 335 ProSiteProfiles SANT domain profile. 155 203 IPR017884 -
Alju07g0714 335 NCBIfam myb-like DNA-binding domain, SHAQKYF class 150 202 IPR006447 GO:0003677
Alju07g0714 335 SUPERFAMILY Homeodomain-like 30 85 IPR009057 -
Alju07g0714 335 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 147 203 IPR017930 -
Alju07g0714 335 FunFam transcription factor MYB1R1 153 204 - -
Alju07g0714 335 CDD SANT 154 199 IPR001005 -
Alju07g0714 335 Gene3D - 153 203 - -
Alju07g0714 335 ProSiteProfiles Myb-like domain profile. 147 199 IPR001005 -
Alju07g0714 335 Pfam Myb-like DNA-binding domain 154 199 IPR001005 -
Alju07g0714 335 SUPERFAMILY Homeodomain-like 148 202 IPR009057 -
Alju07g0714 335 SMART sant 28 80 IPR001005 -
Alju07g0714 335 SMART sant 151 201 IPR001005 -
Alju07g0714 335 MobiDBLite consensus disorder prediction 128 154 - -
Alju07g0714 335 FunFam Transcription factor SRM1 24 91 - -
Alju07g0714 335 MobiDBLite consensus disorder prediction 226 251 - -
Alju07g0714 335 Gene3D - 24 91 - -
Alju07g0714 335 CDD SANT 31 77 IPR001005 -
Alju07g0714 335 PANTHER DUPLICATED HOMEODOMAIN-LIKE SUPERFAMILY PROTEIN-RELATED 28 302 IPR043363 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju07g0714 Alju-ChrAlju07 11253155 11254372 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Alju07g0714 Myb_DNA-binding 1.7e-12 CL0123