LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Alju07g0679	ATGTTCGTTATCAGAGAGACAGTTATAGCAAAGCGTTGGAACGACACGAGCAAAGAGGGTTATCGGGTGCGGCAGTGGAGGGATGCACTCAAAGCAGCTGCCAACATTGCCGGCTTTAATTCAACAATTCTGATAGACAGTCAGTTAGTTGAGAATATTGTTGAGGATGTTTTACAAAAATTAGACGTTGGACAATTGTATGTTGCTGATCATCCAGTTGGAATAGAGACAAGAGTTCATGAATTGACAATTGAATGGTCAAAAAAGAGATCCCAAAAATCTCTAATCATAGGCCTATGGGGAATGGGAGGCATTGGCAAAACAACTGTTGCCAAAGCCATTTACAATAAAATTGGTCATCAATTTGGAGCAAGAAGTTTTCTTGCAAATATAAGAGAAAATTCAAAGCATGCTAATGACCAAGTTAATTTGCAAAGGCAACTCATTTCTGATATCACTAAAACACAAGTTTTCAATATACCTGACATTGATAGAGGGAAAAAAATAATTCAAGAAAGATTTCCCAACATAGAATCATTTGTTGTATTGGATGATGTGGATGGTGTCAATCCACTGAATGCTTTATGTGGGAGTCTTGAATGGTTTTGTCCAGGAAGTGTAATAGTCATAACAACAAGAGATATGCACCTGCTTAATGTCCTTAAAGCTGATCATAAGTACAAAATGAGAGAAATGAACAAAATTGAGTCTCTTGAGCTTTTAAGTTGGCATGCCTTTAAGCAAGTAGTTCCTTTGAATAAAAACTTTAAAGAGCTCTCTAAAAATGTAGTTGATTACTGTGGTGGACTTCCACTAGCTCTTGAAATTCTTGGTTCTTGTTTGCATGAGAGAACAATTCAAGAATGGAGGGCTACATTGTTCAAACTACAAAGGATTCCTAATAAAGATATACATGAAAAGTTAAGAATAAGTTATGATGGATTGAATGATCACATGGAGAAGGATATCTTCCTTGATATATGTTGCTTCTTCATCAATAAGGACAGGAGCTATGTTACACAGATATTAGATGGTTGTGGACTTCATGCAAAAAGTGGACTACAAGTCCTCGTAGAGCGGAGCCTCTTAAAAGTTGATAGAAATAATAAGCTTGAAATGCATGATTTATTACAAGAAATGGGGAAAGAAATCATCCGTGAAAGCTCCCCTAAAGATCCTGAGGAACGTACCAGATTATGGTTTCATGAAGATGTACTTGATGTGCTAATAGAACATACGGGAACCAAAGCTATTGAGGGTATATCTTTGAAGGTGCCTGGAACTCACAAAGAGTGTCTCATTGATTCTAAGGCATTCAAGAAGATGAGAAAACTTAGATTGCTCGAACTAGATTATGTAAATCTTAAAGGAGATTATGCACTTCTTTCCAAAAGGCTAAGGTGGCTTTGTTGGCATGGATTTCCATTGAAATGCACTCCAAACACCTTTTACCAAAAAAAATTAGTTGCTATTGACTTCAAATATAGCAACCTCCAAGTAGTTTGGAAAGAGCCCCAGTTATTGGAGATGTTGAAAACACTCAATCTCAGTCATTCGTCTTACTTGACGCAAACTCCTGATTTTACAAAACTGCCCAACCTTGAAAGGCTAGTGATGAAAGATTGTCAAAGCTTGATTTTAATTGATGAGAGCATTGGAGATCTAAAACATCTTCTTCATGTGAATCTAAAAGATTGCAAGAGCCTTAGAGAGCTTCCTAGAAGCATCTACAAGTTGAAATCATTAAAAACTCTCATTCTTTCTGGATGTTTATTGATTGACCATTTAGAAGAAGATTTTGAGCAAATGGAGGGCTTGACAAGTCTTATGGCAGATAATACTGCCATAACACAAGTACCATTTTCATTAGCAAGATTGGGAGGGCTTGTACAACATGGATATGTATCTTTGTGTGGGTATGAAGGAAGAGCACAAGATATATTTCCTTCTCTCGTATCGTCTTGGATGTCACGTAGCAATATTCCCCAATCCTCTATTGAAGAATTTGTGCAAAGCATATCATCTCTAGTTTTGTCACTTGGACAAAATAGTGGCTTTCATAGCTTATCTCCATTTCAATTTGCAAGGCCAGCTAATTCCTTCAATTCTCTTTTACTTCAACTGGGCGGGTGCGACAAAGCAGAAATCCTGAAAGACAGAATTTCACAGGGATGGAATTATGGTGGATGGGATGATTCTCACCTACCTGGAGATCAGTATCCTGATTGGTTCATATATAAGGGTGAAGGATGCTCAGTAAATTTTAAGGCGCCTCAAGTCATAGGCTGTCAATTGAAAGCAATGCTTCTCAATGTTGTGTATTACTCCTGCATGGATAACACAACAACGCCTCAATTTCTCATAAATGTCCTGATCATTAACTACACCAAGGCTATTATTATGCAACACGGGGGAGACTGGGTAACTTTTCATGAAAATGCAAAGTGTCAAAATATCATTCCAAGTGTTCAACCTGGCGATCTGGTGGAGCTTGTTTTAAGTATTGGGCCTCAATTTCTTGTGAAGAAGGTTGCAACTTACTTAATATATGACGGTTCTAAGCGTCGCAGGTTATTGAAATAA	2583	0.3751	MFVIRETVIAKRWNDTSKEGYRVRQWRDALKAAANIAGFNSTILIDSQLVENIVEDVLQKLDVGQLYVADHPVGIETRVHELTIEWSKKRSQKSLIIGLWGMGGIGKTTVAKAIYNKIGHQFGARSFLANIRENSKHANDQVNLQRQLISDITKTQVFNIPDIDRGKKIIQERFPNIESFVVLDDVDGVNPLNALCGSLEWFCPGSVIVITTRDMHLLNVLKADHKYKMREMNKIESLELLSWHAFKQVVPLNKNFKELSKNVVDYCGGLPLALEILGSCLHERTIQEWRATLFKLQRIPNKDIHEKLRISYDGLNDHMEKDIFLDICCFFINKDRSYVTQILDGCGLHAKSGLQVLVERSLLKVDRNNKLEMHDLLQEMGKEIIRESSPKDPEERTRLWFHEDVLDVLIEHTGTKAIEGISLKVPGTHKECLIDSKAFKKMRKLRLLELDYVNLKGDYALLSKRLRWLCWHGFPLKCTPNTFYQKKLVAIDFKYSNLQVVWKEPQLLEMLKTLNLSHSSYLTQTPDFTKLPNLERLVMKDCQSLILIDESIGDLKHLLHVNLKDCKSLRELPRSIYKLKSLKTLILSGCLLIDHLEEDFEQMEGLTSLMADNTAITQVPFSLARLGGLVQHGYVSLCGYEGRAQDIFPSLVSSWMSRSNIPQSSIEEFVQSISSLVLSLGQNSGFHSLSPFQFARPANSFNSLLLQLGGCDKAEILKDRISQGWNYGGWDDSHLPGDQYPDWFIYKGEGCSVNFKAPQVIGCQLKAMLLNVVYYSCMDNTTTPQFLINVLIINYTKAIIMQHGGDWVTFHENAKCQNIIPSVQPGDLVELVLSIGPQFLVKKVATYLIYDGSKRRRLLK	860

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Alju07g0679	860	Gene3D	-	231	316	IPR042197	-
	Alju07g0679	860	SUPERFAMILY	P-loop containing nucleoside triphosphate hydrolases	64	327	IPR027417	-
	Alju07g0679	860	PRINTS	Disease resistance protein signature	173	187	-	-
	Alju07g0679	860	PRINTS	Disease resistance protein signature	506	522	-	-
	Alju07g0679	860	PRINTS	Disease resistance protein signature	267	281	-	-
	Alju07g0679	860	PRINTS	Disease resistance protein signature	96	111	-	-
	Alju07g0679	860	Gene3D	Ribonuclease Inhibitor	340	726	IPR032675	-
	Alju07g0679	860	Gene3D	-	6	66	IPR035897	-
	Alju07g0679	860	Pfam	NB-ARC domain	76	312	IPR002182	GO:0043531
	Alju07g0679	860	SUPERFAMILY	"Winged helix" DNA-binding domain	303	409	IPR036390	-
	Alju07g0679	860	Gene3D	-	67	229	IPR027417	-
	Alju07g0679	860	SUPERFAMILY	L domain-like	433	690	-	-
	Alju07g0679	860	PANTHER	LEUCINE-RICH REPEAT-CONTAINING PROTEIN	21	714	IPR044974	GO:0006952

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Alju07g0679	Alju-ChrAlju07	10529770	10533806	Dispersed/Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Alju07g0679	486	629	WRKY Transcription Factor Family	AT4G12020	36.054	6.38e-11	64.7