Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju07g0549 ATGGGGAGATGTCCATGTCGCTCAGACAAAGAAGGGCTGAAAAGAGGAGCATGGACTGATCAAGAAGACAAGTTACTCACTTGTTATATTATGGCCCACGGCCAAGGCAAATGGACCCACGTCCCTAAAGCGGCTGGCTTGAACAGGAGTGGCAAAAGCTGTAGACTCAGATGGCTGAACTATCTCAGGCCTGACATTAAGCGAGGAAACATCACTCGCGATGAAGAAGATCTCATCATTAGGCTCCATAAACTTCTTGGCAACAGATGGTCTCTCATAGCTGGAAGGATACCCGGACGAACAGACAATGAAATAAAAAACTACTGGAACACAACTTTGTCGAAGAAGCTTAGCACACAATCATGTGTAACGGCGACTGAACAACATCAATCGAGCAATTCAACGGCAAGGGAGCCTTACGATACTCTGTCAGCAGTTATCCAAACAAAGCCTTGGAAATGCAAAAACGTGGTTATGCCACATCCTCCATGTCACCAGATAGAGTTTCAGGAAGCTGACGTAACCACCCAGCTTTTCAATAATCAATCTCAAAACTCATCACCTCCTTCAGGGTCTCGAGTTAATGATGTCCATGAACATCATCAGTTTAATCAAAATGATAGCTTTGACGTGAATTTGTTGAGCCTTGGAAACAATAATGTTTTTTGCACGGACTTCAATTGTGAGAGCAGTGTAGCCATGGATGCTCACAATGATCAGTGCCAGCCTATTGACCAAGTTATGTTCAGTGGTGCTTGGACCACGAGTTGCTTTGAGGTCGACATCGATAGTATTGGCTCTTATTGGGATATTGATTCATTGGCCCTCCTCCTAGAATCTGAGGTTTCAGACGTGAGTCCTGTGAATTCATGA 873 0.4456 MGRCPCRSDKEGLKRGAWTDQEDKLLTCYIMAHGQGKWTHVPKAAGLNRSGKSCRLRWLNYLRPDIKRGNITRDEEDLIIRLHKLLGNRWSLIAGRIPGRTDNEIKNYWNTTLSKKLSTQSCVTATEQHQSSNSTAREPYDTLSAVIQTKPWKCKNVVMPHPPCHQIEFQEADVTTQLFNNQSQNSSPPSGSRVNDVHEHHQFNQNDSFDVNLLSLGNNNVFCTDFNCESSVAMDAHNDQCQPIDQVMFSGAWTTSCFEVDIDSIGSYWDIDSLALLLESEVSDVSPVNS 290
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju07g0549 290 SMART sant 14 64 IPR001005 -
Alju07g0549 290 SMART sant 67 115 IPR001005 -
Alju07g0549 290 ProSiteProfiles Myb-like domain profile. 10 62 IPR001005 -
Alju07g0549 290 FunFam Transcription factor TT2 71 140 - -
Alju07g0549 290 FunFam MYB-related transcription factor 14 67 - -
Alju07g0549 290 Gene3D - 71 141 - -
Alju07g0549 290 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 63 117 IPR017930 -
Alju07g0549 290 Gene3D - 14 67 - -
Alju07g0549 290 CDD SANT 72 113 IPR001005 -
Alju07g0549 290 ProSiteProfiles Myb-like domain profile. 63 113 IPR001005 -
Alju07g0549 290 Pfam Myb-like DNA-binding domain 15 62 IPR001005 -
Alju07g0549 290 Pfam Myb-like DNA-binding domain 68 112 IPR001005 -
Alju07g0549 290 PANTHER TRANSCRIPTION FACTOR MYB8-RELATED-RELATED 1 192 - -
Alju07g0549 290 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 10 62 IPR017930 -
Alju07g0549 290 SUPERFAMILY Homeodomain-like 12 109 IPR009057 -
Alju07g0549 290 CDD SANT 17 62 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju07g0549 Alju-ChrAlju07 7812956 7814003 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju07g0549 1 128 MYB Transcription Factor Family AT2G16720 62.500 2.57e-54 176
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Alju07g0549 Myb_DNA-binding 1.8e-15 CL0123