Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju07g0522 ATGAGCAAAAAGCGGTTTTCGTCGTACTCGGAGCTCCATGAAGGAAAATTTAAGATTAAATTTAATGGAGCTCCAGGTTCAGGTTCGTTAGTTCGAATTTGTGACTTCTGTGGAAAACAATTCAATTCTGGAAAAGCCCTAGGAGGCCACAGAAGATATCACATCCAAGCTCATAGAAAGATGGACGGTCACAATCAGGCTCAACAATCCTTTCGTTGCCTTGTCTGCGACAAGGATTTTCCATTGAAGAAGTCACTGTACGGTCATATGAGATTGCACCCTGATAGAGATTGGAGAGGTATGAACCCTCCTTTCACTGCTACTGATAACGCTCTAGCTTCTTCAGAAGAAGAAGAGTTGATGAAAGTACAAGATCATCAAAACCACAATAAGAGGTCTTCATCTTCAACTTCAGAAGAATTATTATCGGTACCGGTTGATCTTTCTTCATCTTGTTCAGGAAGAAGCTGGCTCAATAGGGATATGAGAGGAAGGAAAAGCATTGAAGAAGCAGAAGCAGCTCATATTAAAGCTAAAACCCTTATGGATATGCATATCTTTGGTAACTCCCACCTTCGTCGTTGTCATCTTCCTCCTCGCGACGAGCCTACTCCTGAAGAAGCTGCACTATTACCAGTCAAGGAAAGGAAGAAGAATGTGATGATGAACCATGGTGGTGGTTCTTCTTCTTCACTAGCTGGGAAACAAAGCTGGGATAATTGCAAGGAGAAATTAGAGGGTAGTAATAATGAGAATGAAGAATTGGAAACTGAGAATAATATGTGGGATATGAAAGTGGTCAACTTAATCAAAGAGAAGAAGAAGCTCAATATGAAGAGGAGAAAATTAGGTACAGAGATGATCAAGTCAGAAGGAGAACTGCTGATGATAAGATCTCTGAAGAAGCAAGAAGTGAAGCCATCACAAAGCTATGTATGTGACATCTGTAATAAATCTTTCCTGTGTTTTCAAGCTTTAGGAGGACACAAAACCAAACACAGGAAGAACATAGTTAAAAGCACCAAGGGCAAGGAAGCAGTGGAACAAAGACAAGAAGAAGAAGAAGAAAGGTTTGCATCAATGGAACTTTATTGTCACGTGCAGGATTGA 1110 0.4054 MSKKRFSSYSELHEGKFKIKFNGAPGSGSLVRICDFCGKQFNSGKALGGHRRYHIQAHRKMDGHNQAQQSFRCLVCDKDFPLKKSLYGHMRLHPDRDWRGMNPPFTATDNALASSEEEELMKVQDHQNHNKRSSSSTSEELLSVPVDLSSSCSGRSWLNRDMRGRKSIEEAEAAHIKAKTLMDMHIFGNSHLRRCHLPPRDEPTPEEAALLPVKERKKNVMMNHGGGSSSSLAGKQSWDNCKEKLEGSNNENEELETENNMWDMKVVNLIKEKKKLNMKRRKLGTEMIKSEGELLMIRSLKKQEVKPSQSYVCDICNKSFLCFQALGGHKTKHRKNIVKSTKGKEAVEQRQEEEEERFASMELYCHVQD 369
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju07g0522 369 ProSitePatterns Zinc finger C2H2 type domain signature. 73 93 IPR013087 -
Alju07g0522 369 ProSitePatterns Zinc finger C2H2 type domain signature. 34 54 IPR013087 -
Alju07g0522 369 Coils Coil 238 272 - -
Alju07g0522 369 ProSiteProfiles Zinc finger C2H2 type domain profile. 71 98 IPR013087 -
Alju07g0522 369 MobiDBLite consensus disorder prediction 112 142 - -
Alju07g0522 369 SMART c2h2final6 71 93 IPR013087 -
Alju07g0522 369 SMART c2h2final6 311 333 IPR013087 -
Alju07g0522 369 SMART c2h2final6 32 54 IPR013087 -
Alju07g0522 369 SUPERFAMILY beta-beta-alpha zinc fingers 70 333 IPR036236 -
Alju07g0522 369 Gene3D Classic Zinc Finger 28 101 - -
Alju07g0522 369 MobiDBLite consensus disorder prediction 115 133 - -
Alju07g0522 369 ProSitePatterns Zinc finger C2H2 type domain signature. 313 333 IPR013087 -
Alju07g0522 369 ProSiteProfiles Zinc finger C2H2 type domain profile. 311 333 IPR013087 -
Alju07g0522 369 Pfam C2H2-type zinc finger 32 54 - -
Alju07g0522 369 Pfam C2H2-type zinc finger 311 335 - -
Alju07g0522 369 Pfam C2H2-type zinc finger 71 95 - -
Alju07g0522 369 PANTHER C2H2 TYPE ZINC FINGER TRANSCRIPTION FACTOR FAMILY-RELATED 64 352 IPR044653 GO:0003700
Alju07g0522 369 ProSiteProfiles Zinc finger C2H2 type domain profile. 32 54 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju07g0522 Alju-ChrAlju07 7232206 7233448 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju07g0522 33 104 C2H2 Transcription Factor Family AT2G26940 33.010 1.03e-11 63.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Alju07g0522 zf-C2H2_6 3.5e-08 CL0361