Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju07g0521 ATGATCGAGAACAAGAAGGAGAACCAAGAGTTCGATCAGGAATCCTCCGACAACGAGGAAGAGAAGATGAGCGAAAAGCCGTTCTCGTCTTACTCGGAGCTCCATGAAGGAAAATCCAAGATTAATATTAATGGAGCTTCAGGTTCAGCTATAGGTTCAGGATCATCAGTCAGAGTTTGTGACTTCTGCGGAAAACAGTTTAATTCAGGAAAAGCCCTAGGAGGTCACAGAAGATATCACATCCAAGCTCAGAAAAAATTGGAGGCTCAGAATCAGGCTCAACAACAACGACAAGAAAAAGTCAATTATACCCTTAGAATCAAGACCAAGGATTTGGTCATCCGCCATTATGATAATAATAATCTCATCAAATCGAATATTGGGGATCTCAATTGTTCATCTTCGAGATCTTTCCGGTGTTGTGTCTGCGACAAGGATTTTCCATCGGAGAAGTCACTGTACGGTCATATGAGATCTCATCCTGAGAGAGAATGGAGAGGTATGAACCCTCCTTTCGTTACTACTGATAACGATCTAGCTTCTTCTCCTTCTGTAGAACAATTGAACAATGGTTCTTCATCTTCAACTTTTGAAGAATCATCATCACCAGGACCAGTTGATCTTTCTTCATCATGTTCTGGAAGCAGCTGGCTCAAGAAAGATAAGAGAGGAAGAAAAATCATTGGAGAAGCAGAAGCAGCTCATATTGCAGCTCATACCCTTATGCGTATGCATCTCTATGGTAATGATGAATTGGAAGCTCAAAACCTTTGTTGTCCTTGCGACGAGCCTACTCCTGAAGAAGCAGCACTATTACCAGTCAAGAAAAGGAAGAACAATGTGATGAAGAAGAACCATGTTGCTGATTACAAGGAGAAATTAGAGGGTAGAGATGGGGATGATGAATTGGAAGCTGAGAATAATACGTGGGATGTGAAAGTGATAAGCTTAATCAAAGAGAAGAAGCTGAATAAGAAGACGAACAAGAAGCTGAAATTAGGTGCAGAGATGATCAAGTCAGAAGGAGAATCGCCGGTGATAAGAACTGTGAAGCAAGAAGAAGTGAAGCCATCACAAAGCTATGTATGTGACATCTGTAATAAATCTTTCCCATGTTTTCAAGCTTTAGGCGGACACAAATCCAAACACAACAGAGAGAAGAACATGGCTAAAAGCATGAAGGGCAAAGAAGTGGTGGAACAAAGGGGAGGAGGAGGAGGAGGAGGAGACAAGATCTGCATCAATGGAACTTTATTGTCAAGTGCAGGATTGAGTGGTGAAGAAGAGGAGGAGGAAGAAGAAGAAGCGTCTCTGATGAGTAGTGAAGAGAGATTAATAATAAGTTCGAATGATAATAATGAGGATAACAGTAATGAAGAGGAAGTGGGAGAGGCAAGTCAACAATCTGGTTCGAAAATAAGGGGTTTTGATCTGAATGTGCCTTATGTTTTGGAGCACGAAGCAACTGAAATATAA 1476 0.4119 MIENKKENQEFDQESSDNEEEKMSEKPFSSYSELHEGKSKININGASGSAIGSGSSVRVCDFCGKQFNSGKALGGHRRYHIQAQKKLEAQNQAQQQRQEKVNYTLRIKTKDLVIRHYDNNNLIKSNIGDLNCSSSRSFRCCVCDKDFPSEKSLYGHMRSHPEREWRGMNPPFVTTDNDLASSPSVEQLNNGSSSSTFEESSSPGPVDLSSSCSGSSWLKKDKRGRKIIGEAEAAHIAAHTLMRMHLYGNDELEAQNLCCPCDEPTPEEAALLPVKKRKNNVMKKNHVADYKEKLEGRDGDDELEAENNTWDVKVISLIKEKKLNKKTNKKLKLGAEMIKSEGESPVIRTVKQEEVKPSQSYVCDICNKSFPCFQALGGHKSKHNREKNMAKSMKGKEVVEQRGGGGGGGDKICINGTLLSSAGLSGEEEEEEEEEASLMSSEERLIISSNDNNEDNSNEEEVGEASQQSGSKIRGFDLNVPYVLEHEATEI 491
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju07g0521 491 SMART c2h2final6 58 80 IPR013087 -
Alju07g0521 491 SMART c2h2final6 361 383 IPR013087 -
Alju07g0521 491 SMART c2h2final6 138 160 IPR013087 -
Alju07g0521 491 ProSitePatterns Zinc finger C2H2 type domain signature. 363 383 IPR013087 -
Alju07g0521 491 ProSiteProfiles Zinc finger C2H2 type domain profile. 361 388 IPR013087 -
Alju07g0521 491 MobiDBLite consensus disorder prediction 383 480 - -
Alju07g0521 491 ProSiteProfiles Zinc finger C2H2 type domain profile. 138 165 IPR013087 -
Alju07g0521 491 SUPERFAMILY beta-beta-alpha zinc fingers 359 389 IPR036236 -
Alju07g0521 491 Pfam C2H2-type zinc finger 58 80 - -
Alju07g0521 491 Pfam C2H2-type zinc finger 138 162 - -
Alju07g0521 491 Pfam C2H2-type zinc finger 361 385 - -
Alju07g0521 491 PANTHER C2H2 TYPE ZINC FINGER TRANSCRIPTION FACTOR FAMILY-RELATED 19 483 IPR044653 GO:0003700
Alju07g0521 491 MobiDBLite consensus disorder prediction 19 33 - -
Alju07g0521 491 Gene3D Classic Zinc Finger 58 160 - -
Alju07g0521 491 SUPERFAMILY beta-beta-alpha zinc fingers 59 160 IPR036236 -
Alju07g0521 491 ProSitePatterns Zinc finger C2H2 type domain signature. 140 160 IPR013087 -
Alju07g0521 491 MobiDBLite consensus disorder prediction 161 217 - -
Alju07g0521 491 ProSiteProfiles Zinc finger C2H2 type domain profile. 58 85 IPR013087 -
Alju07g0521 491 MobiDBLite consensus disorder prediction 383 398 - -
Alju07g0521 491 Coils Coil 86 106 - -
Alju07g0521 491 ProSitePatterns Zinc finger C2H2 type domain signature. 60 80 IPR013087 -
Alju07g0521 491 MobiDBLite consensus disorder prediction 174 217 - -
Alju07g0521 491 MobiDBLite consensus disorder prediction 1 35 - -
Alju07g0521 491 Coils Coil 424 444 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju07g0521 Alju-ChrAlju07 7228484 7229959 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju07g0521 59 171 C2H2 Transcription Factor Family AT2G26940 33.051 1.20e-12 66.6
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Alju07g0521 zf-C2H2_6 3.6e-09 CL0361