Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju07g0439 ATGGTGACGGTGATGATGATGAAAGAGAAAGGGTCGGCAACAATAACTGCAGAACAACAAAACACAGTAGACCCCACTTCATTAAGACCCGCATCACATACAATCCATATAGATTGCCTTCCAATAGTTGTGGCTACTACAAGGAGGCTGCCTTCAGATTCTGGTGGTGCCTTCGCTGACTGGGCAACCACATCTTCTTCCGCACGCGGCGCCGCCCCCGACGATCTTTCCCTCGGATTCAATGCCTCCGCCGCCGCCGCTGCCGGGGGAAATCCCGCCGGGATGTGGTCTGGTGGAGGATCGTCTAGGTCACTTAACTTCGGCCATTCTGAGATGGGCATGGTGGGCCTTCGAGACGTCTTCGTGGTGGCTCCTGCTTCTTCCTACCACCATCATCATAACGACGTCGTCATGGCCGATCCTCATCACAACGCCGCCACCATCCACGGCGTTATTCCACTCCTCACGGCGGCTCCTTGTCTCGATGGTGACACAAGCAACATGCTCAATCTCAGTAGCCATAATAATAACCGAAGCCGTAACACCGGAATTCAGCTTTGGCAGGATCATTACTTGAAGAAGCAAGGCCTTAACCCCGAACACGGCAATGGTACAACGACTTCCGGCAACCTAGCTCACAGCGGCGGCGGCGGGTTAAGCGGTGGCTCGGGTTTGAGCTCAGGAGGAACAACGTGCCAAGACTGTGGCAATCAGGCGAAGAAAGATTGCAGTCATAGAAGGTGTAGAACTTGCTGTAAGAGCCGAGGTTTTGATTGCCATACTCACGTGAAGAGCACCTGGGTACCCGCTGCTCGTCGGAGGGAACGCCAGCTTGTCGCGGCCACCGCCGCATCTGGTGGCGGCGGCGGGTTTAGTGGGGCTACATCAGGCTCCAAGAAACCTAGACTCGTCGCCTCACAAACCACCACCACCTCTCGTACTTCTACTTCCAACACAACTCCTCGAAGCTTCGACACTAGCTCTAGCCATCAAGATGCGAGTTTCAAAGAGTCATTGCCAGGTCAAGTACGGGCGCCGGCGGTGTTCAAGTGCGTTCGTGTGACGGCGGTGGATGACGGGGACGATGAGTATGCTTATCAAGCGGTTGTGAAGATTGGTGGCCATGTGTTCAAAGGGTTTTTGTATGATCAAGGGGTTGAAAATGGAGATGGCTATCCTAACCTCTCCGAGCTGCATTTGGGTGGCGGCGGCGGCGGCGGGAACGGCGGAACAAGCGGCGGTGCAGGAAGAAATGGAGTCACTTCATCTTCCTTAATGCTTGATCCTTCTGATGTATATGCTGCTGGTTCAGGTGGGGCTATACTTGCCGGTTCAACATATGGTAATGCCATAAATTGA 1359 0.5416 MVTVMMMKEKGSATITAEQQNTVDPTSLRPASHTIHIDCLPIVVATTRRLPSDSGGAFADWATTSSSARGAAPDDLSLGFNASAAAAAGGNPAGMWSGGGSSRSLNFGHSEMGMVGLRDVFVVAPASSYHHHHNDVVMADPHHNAATIHGVIPLLTAAPCLDGDTSNMLNLSSHNNNRSRNTGIQLWQDHYLKKQGLNPEHGNGTTTSGNLAHSGGGGLSGGSGLSSGGTTCQDCGNQAKKDCSHRRCRTCCKSRGFDCHTHVKSTWVPAARRRERQLVAATAASGGGGGFSGATSGSKKPRLVASQTTTTSRTSTSNTTPRSFDTSSSHQDASFKESLPGQVRAPAVFKCVRVTAVDDGDDEYAYQAVVKIGGHVFKGFLYDQGVENGDGYPNLSELHLGGGGGGGNGGTSGGAGRNGVTSSSLMLDPSDVYAAGSGGAILAGSTYGNAIN 452
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju07g0439 452 MobiDBLite consensus disorder prediction 195 223 - -
Alju07g0439 452 MobiDBLite consensus disorder prediction 199 223 - -
Alju07g0439 452 PANTHER PROTEIN LATERAL ROOT PRIMORDIUM 1 160 435 IPR007818 GO:0003700|GO:0006355
Alju07g0439 452 Pfam Domain of unknown function (DUF702) 229 387 - -
Alju07g0439 452 MobiDBLite consensus disorder prediction 299 336 - -
Alju07g0439 452 MobiDBLite consensus disorder prediction 282 338 - -
Alju07g0439 452 NCBIfam putative zinc finger domain, LRP1 type 231 273 IPR006510 -
Alju07g0439 452 NCBIfam LRP1 C-terminal domain 339 386 IPR006511 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju07g0439 Alju-ChrAlju07 5410982 5413269 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju07g0439 44 432 C2H2 Transcription Factor Family AT5G12330 50.000 6.37e-103 311
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SRS Alju07g0439 DUF702 1.2e-62 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Alju07g0439 07 5410982 5413269 Alju07g0439 07 5410982 5413269 ECH