Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju07g0411 ATGGCTTTCTTCAGGAACTTTTCAAATGAAACAGTTTCACATAGTGTCCTGGAAGAAAAAGGCCAAGGACAAAATGCTGATAGGATCCACAAATCAGTTGGCAATGAATGTGGTGAGGCATCTTCAAGTGAGAAAGAGTTTGATATGAACATGGATGCTCAGTATCAGAGTGATGGTGAACCAGATGGCAGACTGCAAAATGAGGCTGCAGCTGATGGAGGTGGTAACATTCAGTCTACTGGAAGTAAAACTGCTATGGTTGGAAGGTGGGGTTCAACTTTTTGGAAGGACTGCCAGCCTATGAGCCATCAGAATGGGCAGGAATATGGGCAAGAATCACAAAGTGGATCAGACTATAGAAATGCAGAAGGGGCTGAAGATAATTCATCAGATGGAAGAGGGGAAAGATTAGATTCAGAAGATGATGATGGACAGAAAGAATCAGGAAAAGGTCCTAGAGGCCATTCTGATGTGCCTGCTGAGGAGATGTTGTCTGATGAATATTATGAGCAGGAAGAGCACAGTGATTCATTGCATTACAGGGGGTTTCATCAACCGACTGGATCAAGTTCATGGCCTCAACAGATGTCTAATGCTGTCAATAGTCGTGCAAATAAGAATTCTAGAATTTCAGATGATGTTGAAGATGATGATGGTGATGATGATAATGATAATGACGATGGTGATGCTGATTATGAAGAAGAGGATGAAGCAGATGAAGATGATCCTGATGATGTGGACTTTGAGCCCGCCACAAGTGGTCGTTCTGCTAACAAGGATAGAGATTGGGAGGGTGAAGAATCGGATGATGACAGTGATGATAATCTGGATGTTTCAGATGACGATGATACCTACTATACAAGAAAACCTACAGGTAGGCAACGTGGCAAAGTGGGAAGAACTGTAAAACCTACTAGAGAACGCAAATCATTTGGGGCATCTGGTAGGCAAAGAAAACCTAAAATTGCTTATGAAGAGGATGAGTCAACAGCAGAGGATTCTGAGAGTGAAAGTGATGATGATTTCAAAAGCATGAGAAAGAGAGGTGCAAATGCTTGCAAGAACAATGGCCGTTCTTCTGCAGCTGCAGGTTTTTCTGGCCGGCACAGTGAGGTTCGCACATCTAGTAGAACAGTTAGGAGGAAGGTGTCATATGCTGAAAGTGAAGAAAGTGAAGAAGCAGATGAAGGGAAGAAGAAGAAGTCTCAAAAAGAAGAACTTGAAGAGGAAGATGGTGACTCCATTGAAAAGGTGCTTTGGCATCAGCCAAAGGGCATGGCTGATGAGGCGCAGAGGAATAATAGATCGACAGAACCTGTTTTATGGAGTAATTTGTTTGATTCTGTACCTGATTGGAATGAGATGGAATTCTTAATAAAATGGAAAGGCCAGTCACATTTGCACTGTCAATGGAAGTCATTTGCTGAGCTGCAAAATCTCAGTGGTTTTAAGAAGGTTTTAAATTATACGAAGAAAGTGACGGAGGACATCAGGTACAGGAACACAATCACGAGAGAGGAGATTGAAGTCAATGATGTGAGTAAGGAAATGGACTTAGACATTATCAAGCAAAATAGCCAGGTGGAGAGAATCATTGCAGATAGAATCAGCAAAGATAATTCTGACAATGTTATTATAGAATATTTGGTCAAGTGGCAAGGGCTGTCTTATGCTGAAGTGACATGGGAGAAGGACACAGATATTGCTTTTGCTCAGCATGCTATTGATGAGTACAAGGCTCGTGAGGCTGCAATGTCAGTTCAAGGAAAGATGGTAGATCTACAACGCAAGAAAAGCAAAGCAAGTTTGAGGAAGCTTGATGAACAGCCTGAGTGGTTGAAGGGTGGGAAGCTTCGTGATTATCAACTTGAGGGTTTGAATTTTCTTGTTAACAGTTGGAGAAATGACACAAATGTTATTTTAGCTGATGAAATGGGTCTGGGCAAAACTGTTCAGTCAGTATCAATGCTTGGTTTTCTTCAGAATGTCCAGCAAATCCATGGTCCTTTTCTTGTAGTTGTGCCTTTGTCTACTTTGTCAAACTGGGCCAAAGAATTCAGGAAGTGGCTTCCTGATATGAATATTATTGTATATGTTGGTAATCGAGCAGGGCGAGAGGTTTGTCAACAGTATGAATTTTATAACGACAAAAAGGTTGGCGGACCTATAAAATTTAATACCCTTTTGACTACTTATGAAGTAGTTCTGAAGGATAAAGCTGTTCTCTCCAAGATTAAATGGAATTATTTGATGGTTGATGAGGCTCATAGACTGAAAAATAGTGAGGCTCAGTTGTACACTACACTTTCAGAATTTAGCACCAAGAACAAATTGCTTATCACTGGCACTCCACTACAGAACAGCGTTGAAGAGCTATGGGCTTTACTTCATTTCCTTGATCCTGATAAGTTCAAGAGCAAGGATGATTTTGTTCAAAACTATAAGAATCTGAGTTCGTTCAATGAGAATGAGCTTGCCAATCTTCACATGGAATTGAGGCCTCACATGCTCCGAAGAGTCATCAAAGATGTGGAGAAATCATTGCCCCCAAAAATTGAGCGGATACTTAGAGTGGAAATGTCTCCTCTTCAAAAACAGTATTACAAGTGGATTTTGGAACGTAACTTTCAGGATTTGAACAAAGGAGTTCGTGGGAATCAGGTTTCTCTACTTAATATTGTGGTTGAATTAAAGAAGTGCTGCAACCATCCCTTCCTGTTTGAAAGTGCTGACCATGGTTATGGGGGGGACTCAGGAAGTAGTGATAGCAGTAAACTTGAGAGAATTGTCTTCAGCAGTGGGAAGCTTGTCATACTTGATAAGCTACTTGTTAAATTGCATGAGACTAAGCATCGTGTTCTGATTTTCTCTCAGATGGTTAGGATGCTGGATATACTGGCTGAGTATATGTCACTTAGAGGATTTCAATTCCAGAGGCTCGATGGCAGTACGAAGGCTGAGTTACGACAGCAGGCAATGGATCATTTTAATGCACCTGGTAGTGATGACTTTTGCTTCCTTCTTTCAACTAGAGCAGGAGGCCTGGGTATCAATCTTGCCACAGCAGACACTGTCATAATATTTGATTCAGACTGGAATCCCCAAAATGACCTCCAGGCCATGAGTAGGGCGCATAGAATTGGGCAACAAGAAGTTGTTAACATATATAGATTTTTGACAAGCAAAAGTGTCGAGGAAGATATTTTGGAACGAGCTAAGAAAAAGATGGTCCTCGACCATTTGGTCATTCAAAAATTAAATGCTGAGGGTAGACTGGAGAAGAAAGAAGCCAAAAAAGGAGGTCTTTTTGACAAAAATGAACTGTCAGCAATTTTAAGATTTGGAGCAGAGGAACTTTTTAAGGAAGAAAGAAATGATGAAGAGAGTAAGAAACGACTTTTAAGTATGGATATAGATGAGATTCTTGAAAGAGCAGAGAAGGTTGAAGAGAAGGACGCTGAGGTAGAGCAAGCGCATGAATTATTGAGTGCCTTTAAGGTTGCTAATTTCTGCAATGATGAAGATGATGGGAGTTTCTGGAGTCGTTGGATAAAACCTGAGGCGGTAGCCCAAGCTGAAGATGCTTTGGCTCCACGTGCTGCAAGGAACATTAAAAGTTATGCTGAGGCCAACCAATCTGAAAGAAGTAGTAAGCGAAAAAAGAAAGAACCTGAGCCTTCTGAGCGAGTTCAGAAGCGCCGGAAAGCAGAGTATTCAGCTCCTGCAATGCCAATGATTGAGGGAGCATCAGCACAAGTGAGAAGTTGGTCCTATGGGAATGTATCTAAAAGAGATGCACTACGTTTTTCTCGTGCAGTTATGAAATTTGGGAATGAGAGCCAAATCCACTTAATAGCTGCTGAGGTTGGTGGGGCATTTGCAGCTGCTCTGCCAGAAGCTCAGATTGAACTCTTCAATTCTCTAATTGATGGCTGTAAAGAAGCTGTGGAACTAGGAAGTATGGACCCAAAGGGGCCTCTTTTGGATTTTTTTGGTGTCCCAGTGAAGGCAAATGATCTACTTAACCGTGTTCAAGAACTCCAACTCTTGGCAAAGCGCATTAATAGATATGAAGATCCCATTGCACAGTTTCGTGTTTTAACGTATCTTAAGCCTTCAAACTGGTCTAAAGGTTGCGGATGGAATCAAATTGATGATGCAAGATTGCTTCTTGGAATTCATTACCATGGATTTGGTAATTGGGAAAAGATACGACTAGATGAAAGGCTTGGGCTCATGAAGAAGATTGCACCAGTTGAACTTCATCACCATGAAACTTTCTTGCCACGAGCTCCCAACTTGAGAGATCGTGCCAATGCCCTTTTGGAACAAGAACTTGTTGTTCTTGGTGCTAAAAATGCCAGTAGCAAAGGGGGACGCAAGGCTTCCAAGAAGGAGAGGGAAAATCTTACGAACATGTCAGCAGCACGAGGGCCAGAGAAGGGAAAATTAAGTTCTTCTAAAGTTACTGTCCCAATGAGAAAGGATAGACCCCTGAGGCCCCGGAGGATTGAACCAATAGTAAAAGAAGAGGGTGAAATGTCTGACAATGACGAAGTGTATGAGCAGTTCAAGGAAGTAAAATGGATGGAATGGTGTCAGGATGTGATGATTGATGAAATGAAAACCTTGAAACGTCTGCACAGGTTGCAGACAACCAGCGCCAATCTTCCAAAGGAAAAGGTGCTTTCCAAAATCCGCAATTACTTGCAGCTTCTTGGGCTGAGGATAGATCAAATCGTGTTAGAACATGAAGAGGAACCTTATAAGCAAGATAGGATGACTACGCGATTGTGGAACTACGTCTCTACCTTCTCCCATCTTTCAGGGGAGAGGCTGCATCAGATATATTCCAAACTTAAACAGGAGCAACAAGATGAGGCTGGGGTTGGTCCCTCTCACATCAATGGGTCAGTATCTGGTCCATTCGGGAGAAACCACCCTCGCCATATGGAGAGACAAAGAGGATACAAAAATGTGACTTCATATCAAATGCCAGAACCAGTTCACAATACAGGAAAGTCCGAGGCTTGGAAACGAAGGAGGAGAGGAGAAGGCGACAGTCATTTTCAAGGTCAGCCATCGTCTCAGAGAGCTACGGGCAATGGAGTCCAAATATCTGACCCTAACTCGCTGGGGATTCTTGGTGCTGGACCCTCTGATAGACGCTTCGTTAGAGAGAAACCTTACAGGACACGGCCTGGTGGTGCTCCTTCAAGACAGGGTTTCTCATCCGGGATAAAGTAG 5247 0.4239 MAFFRNFSNETVSHSVLEEKGQGQNADRIHKSVGNECGEASSSEKEFDMNMDAQYQSDGEPDGRLQNEAAADGGGNIQSTGSKTAMVGRWGSTFWKDCQPMSHQNGQEYGQESQSGSDYRNAEGAEDNSSDGRGERLDSEDDDGQKESGKGPRGHSDVPAEEMLSDEYYEQEEHSDSLHYRGFHQPTGSSSWPQQMSNAVNSRANKNSRISDDVEDDDGDDDNDNDDGDADYEEEDEADEDDPDDVDFEPATSGRSANKDRDWEGEESDDDSDDNLDVSDDDDTYYTRKPTGRQRGKVGRTVKPTRERKSFGASGRQRKPKIAYEEDESTAEDSESESDDDFKSMRKRGANACKNNGRSSAAAGFSGRHSEVRTSSRTVRRKVSYAESEESEEADEGKKKKSQKEELEEEDGDSIEKVLWHQPKGMADEAQRNNRSTEPVLWSNLFDSVPDWNEMEFLIKWKGQSHLHCQWKSFAELQNLSGFKKVLNYTKKVTEDIRYRNTITREEIEVNDVSKEMDLDIIKQNSQVERIIADRISKDNSDNVIIEYLVKWQGLSYAEVTWEKDTDIAFAQHAIDEYKAREAAMSVQGKMVDLQRKKSKASLRKLDEQPEWLKGGKLRDYQLEGLNFLVNSWRNDTNVILADEMGLGKTVQSVSMLGFLQNVQQIHGPFLVVVPLSTLSNWAKEFRKWLPDMNIIVYVGNRAGREVCQQYEFYNDKKVGGPIKFNTLLTTYEVVLKDKAVLSKIKWNYLMVDEAHRLKNSEAQLYTTLSEFSTKNKLLITGTPLQNSVEELWALLHFLDPDKFKSKDDFVQNYKNLSSFNENELANLHMELRPHMLRRVIKDVEKSLPPKIERILRVEMSPLQKQYYKWILERNFQDLNKGVRGNQVSLLNIVVELKKCCNHPFLFESADHGYGGDSGSSDSSKLERIVFSSGKLVILDKLLVKLHETKHRVLIFSQMVRMLDILAEYMSLRGFQFQRLDGSTKAELRQQAMDHFNAPGSDDFCFLLSTRAGGLGINLATADTVIIFDSDWNPQNDLQAMSRAHRIGQQEVVNIYRFLTSKSVEEDILERAKKKMVLDHLVIQKLNAEGRLEKKEAKKGGLFDKNELSAILRFGAEELFKEERNDEESKKRLLSMDIDEILERAEKVEEKDAEVEQAHELLSAFKVANFCNDEDDGSFWSRWIKPEAVAQAEDALAPRAARNIKSYAEANQSERSSKRKKKEPEPSERVQKRRKAEYSAPAMPMIEGASAQVRSWSYGNVSKRDALRFSRAVMKFGNESQIHLIAAEVGGAFAAALPEAQIELFNSLIDGCKEAVELGSMDPKGPLLDFFGVPVKANDLLNRVQELQLLAKRINRYEDPIAQFRVLTYLKPSNWSKGCGWNQIDDARLLLGIHYHGFGNWEKIRLDERLGLMKKIAPVELHHHETFLPRAPNLRDRANALLEQELVVLGAKNASSKGGRKASKKERENLTNMSAARGPEKGKLSSSKVTVPMRKDRPLRPRRIEPIVKEEGEMSDNDEVYEQFKEVKWMEWCQDVMIDEMKTLKRLHRLQTTSANLPKEKVLSKIRNYLQLLGLRIDQIVLEHEEEPYKQDRMTTRLWNYVSTFSHLSGERLHQIYSKLKQEQQDEAGVGPSHINGSVSGPFGRNHPRHMERQRGYKNVTSYQMPEPVHNTGKSEAWKRRRRGEGDSHFQGQPSSQRATGNGVQISDPNSLGILGAGPSDRRFVREKPYRTRPGGAPSRQGFSSGIK 1748
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju07g0411 1748 MobiDBLite consensus disorder prediction 1212 1236 - -
Alju07g0411 1748 MobiDBLite consensus disorder prediction 300 327 - -
Alju07g0411 1748 CDD CD2_tandem 524 580 - -
Alju07g0411 1748 MobiDBLite consensus disorder prediction 1 20 - -
Alju07g0411 1748 FunFam protein CHROMATIN REMODELING 5 isoform X2 528 580 - -
Alju07g0411 1748 Pfam Chromo (CHRromatin Organisation MOdifier) domain 527 581 IPR023780 -
Alju07g0411 1748 FunFam Chromodomain-helicase-DNA-binding protein 2 isoform 1 849 1079 - -
Alju07g0411 1748 Pfam Domain of unknown function (DUF4208) 1527 1619 IPR025260 -
Alju07g0411 1748 MobiDBLite consensus disorder prediction 124 162 - -
Alju07g0411 1748 MobiDBLite consensus disorder prediction 72 87 - -
Alju07g0411 1748 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 630 802 IPR014001 -
Alju07g0411 1748 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 938 1089 IPR001650 -
Alju07g0411 1748 Coils Coil 1078 1098 - -
Alju07g0411 1748 FunFam Photoperiod-independent early flowering 1 588 862 - -
Alju07g0411 1748 Gene3D - 609 848 IPR038718 -
Alju07g0411 1748 MobiDBLite consensus disorder prediction 1622 1748 - -
Alju07g0411 1748 SUPERFAMILY Chromo domain-like 410 493 IPR016197 -
Alju07g0411 1748 CDD CD1_tandem 411 491 - -
Alju07g0411 1748 Gene3D - 398 525 - -
Alju07g0411 1748 SMART chromo_7 411 494 IPR000953 -
Alju07g0411 1748 SMART chromo_7 524 583 IPR000953 -
Alju07g0411 1748 ProSiteProfiles Chromo and chromo shadow domain profile. 526 590 IPR000953 -
Alju07g0411 1748 SMART ultradead3 614 813 IPR014001 -
Alju07g0411 1748 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 605 839 IPR027417 -
Alju07g0411 1748 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 842 1122 IPR027417 -
Alju07g0411 1748 PANTHER CHROMODOMAIN-HELICASE-DNA-BINDING PROTEIN 3-RELATED-RELATED 180 1678 - -
Alju07g0411 1748 Pfam Helicase conserved C-terminal domain 935 1048 IPR001650 -
Alju07g0411 1748 Coils Coil 1131 1158 - -
Alju07g0411 1748 SUPERFAMILY Chromo domain-like 504 581 IPR016197 -
Alju07g0411 1748 Pfam SNF2-related domain 637 906 IPR000330 GO:0005524|GO:0140658
Alju07g0411 1748 MobiDBLite consensus disorder prediction 214 247 - -
Alju07g0411 1748 MobiDBLite consensus disorder prediction 97 123 - -
Alju07g0411 1748 MobiDBLite consensus disorder prediction 1207 1238 - -
Alju07g0411 1748 Gene3D - 1344 1454 - -
Alju07g0411 1748 SMART DUF4208_2 1515 1620 IPR025260 -
Alju07g0411 1748 FunFam Chromo domain-containing protein 1 401 526 - -
Alju07g0411 1748 Gene3D - 849 1079 IPR027417 -
Alju07g0411 1748 MobiDBLite consensus disorder prediction 1 416 - -
Alju07g0411 1748 MobiDBLite consensus disorder prediction 1453 1491 - -
Alju07g0411 1748 Coils Coil 390 410 - -
Alju07g0411 1748 ProSiteProfiles Chromo and chromo shadow domain profile. 413 492 IPR000953 -
Alju07g0411 1748 SMART helicmild6 964 1048 IPR001650 -
Alju07g0411 1748 MobiDBLite consensus disorder prediction 264 280 - -
Alju07g0411 1748 MobiDBLite consensus disorder prediction 182 207 - -
Alju07g0411 1748 CDD SF2_C_SNF 925 1059 - -
Alju07g0411 1748 MobiDBLite consensus disorder prediction 373 416 - -
Alju07g0411 1748 Gene3D - 528 580 - -
Alju07g0411 1748 MobiDBLite consensus disorder prediction 1673 1688 - -
Alju07g0411 1748 MobiDBLite consensus disorder prediction 1689 1709 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju07g0411 Alju-ChrAlju07 4977362 4995200 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju07g0411 640 1075 RAD5 or RAD16-like Gene Family AT1G02670 26.337 1.45e-35 144
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Alju07g0411 SNF2_N 2.6e-65 CL0023
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Alju07g0411 07 4977362 4995200 Alju07g0411 07 4977362 4995200 ECH