Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju07g0401 ATGATCAGTACAATTTTCAAAAGATCTTGTTCCTTAGTGTCAAGGCGCGCTTTCGCCGCCTCCACGTTGATCGAGCATCAACATCACCTCATCTCATCAGTCGCCGGGTATGGTGGGGTTGCCGGCACTGAGCTTCGGCCATTCTCCAACTTGTTTGGTTCCGGAGGGTTCAAGTCAAGTGCATTTCATTCCCAAGCGGGGCCGTTGAATTTCCGGGCGTCATTGGTTCCTCGTGCTGAGTACGCTATTGATGATTACTCCTTTGAAGAAGGGCCCAAGGGAAACGGTGATGATGGCCTTGATATTGCGAAGCTCGGTATTGCTCAGGATATTGTCTCTGCTTTGGCCAAGAGAGGTATAACGAAGCTCTTCCCTATACAGAGAGCTGTTCTGGAACCTGCCATGCAAGGGCGTGATATGATTGGCCGAGCTAGAACAGGAACTGGGAAAACTCTTGCTTTTGGGATACCTATCATGGACAAGATCATTCAATTTAATGCTAAGCATGGACGAGGAAGGGATCCTCTTGCTTTGGTTTTGGCACCAACTAGAGAACTTGCTCGGCAGGTTGAAAAGGAATTCTATGAGTCAGCACCTAATTTGGATACAATTTGTGTTTATGGTGGAACACCCATTTCTGGCCAAATGAGGCAGCTTGACTATGGTGTTGATATTGCAGTAGGCACACCTGGTCGAATTATTGATCTTATTAACAGGGGCGCTCTAAATTTGAAGGACGTTCAGTTTGTTGTTCTTGATGAAGCTGATCAGATGCTTCAAGTTGGCTTTCAGGAAGAAGTTGAAAAAATCTTGGAGAGGTTGCCTTCCAAACGCCAAACTCTTATGTTCTCAGCAACAATGCCATCTTGGATAAGGCAGATTTCTCGGAAATACTTAAATGATCCAGTAACTATTGATCTTGTTGGAGATTCTGATCAGAAGTTGGCAGATGGAATTACGTTATACTCGATTGCCTCGGATATGTATGGGAAAGCAGGAATTATTGAAACTCTAGTAACTGACCACGCCAAAGGAGGAAAGTGTATTGTTTTCACCCAAACCAAACGTGATGCTGATCGACTATCATATTCCATGTCAAGAAGCCTTAAGTGTGAGGCCTTGCATGGAGACATTTCACAAGCTCAGAGGGAAAGAACTCTTTCTGGCTTTAGAGAAGGCCATTTCAATGTTTTAGTAGCGACTGATGTTGCTTCACGTGGGCTTGACATACCGAATGTTGACCTTATAATACATTTTGATCTTCCCAATAATTCAGAGATATTTGTTCATCGATCCGGACGGACAGGTCGAGCTGGGAAGAAAGGAACTGCCATTCTAATTTATACTCAAGATCAAACCAGGGCTGTCAAGATTATTGAGCGTGATGTTGGCTGCAGATTTTCTGAGCTACCGAGAATTACCGTTGAAGGTGAATCAGTAGGCATGTTTAAGAGCATGGGTGGTGGTCGATTTGGCAATTTTGGAGGTATGCGGGATCGTAGATCTGGTGATTCAGGTTTTGGCCGAGGTCCTGGATTTGGCCGCTCTAGCTTTGGTAATTCTGATGAGAAGGGAAGGTTTGGTGGACCTAGTTCTGGTCGTTTCGGCGGCCATGGATCAAGTCAACCAAGAAGTGGGTTTGGGGGATCATCTGGTAATTCTTCAGGTGAAAGCTCTGGTCGGTATGGTTCATTTGGTGGCTTTGGAAGATCTAGCATAGATCGATCAGGAAGCACCGGAGGATTTGGGTTTAGTCGTCCAAGTGGTAGCAGTGGATTTGGCAGTTCTGATCGTTCTGGTGGTTTTGGCTCGGGTCAATCTAGTTCATTTGGCGACAAATATTCAAACCAAAGGAACGCCTTTGGCCCTTCTGATTTTGTGGCATCTAGGCTTTATCCCCACATATTGCAAAGGATGGATGAGGTTATGGGAGCATAG 1938 0.4536 MISTIFKRSCSLVSRRAFAASTLIEHQHHLISSVAGYGGVAGTELRPFSNLFGSGGFKSSAFHSQAGPLNFRASLVPRAEYAIDDYSFEEGPKGNGDDGLDIAKLGIAQDIVSALAKRGITKLFPIQRAVLEPAMQGRDMIGRARTGTGKTLAFGIPIMDKIIQFNAKHGRGRDPLALVLAPTRELARQVEKEFYESAPNLDTICVYGGTPISGQMRQLDYGVDIAVGTPGRIIDLINRGALNLKDVQFVVLDEADQMLQVGFQEEVEKILERLPSKRQTLMFSATMPSWIRQISRKYLNDPVTIDLVGDSDQKLADGITLYSIASDMYGKAGIIETLVTDHAKGGKCIVFTQTKRDADRLSYSMSRSLKCEALHGDISQAQRERTLSGFREGHFNVLVATDVASRGLDIPNVDLIIHFDLPNNSEIFVHRSGRTGRAGKKGTAILIYTQDQTRAVKIIERDVGCRFSELPRITVEGESVGMFKSMGGGRFGNFGGMRDRRSGDSGFGRGPGFGRSSFGNSDEKGRFGGPSSGRFGGHGSSQPRSGFGGSSGNSSGESSGRYGSFGGFGRSSIDRSGSTGGFGFSRPSGSSGFGSSDRSGGFGSGQSSSFGDKYSNQRNAFGPSDFVASRLYPHILQRMDEVMGA 645
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju07g0401 645 PANTHER ATP-DEPENDENT RNA HELICASE RHLE-RELATED 101 485 - -
Alju07g0401 645 MobiDBLite consensus disorder prediction 571 616 - -
Alju07g0401 645 CDD DEADc 111 306 - -
Alju07g0401 645 Pfam Helicase conserved C-terminal domain 334 439 IPR001650 -
Alju07g0401 645 Gene3D - 101 309 IPR027417 -
Alju07g0401 645 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 131 305 IPR014001 -
Alju07g0401 645 SMART ultradead3 119 322 IPR014001 -
Alju07g0401 645 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 334 478 IPR001650 -
Alju07g0401 645 MobiDBLite consensus disorder prediction 535 561 - -
Alju07g0401 645 SMART helicmild6 359 439 IPR001650 -
Alju07g0401 645 CDD SF2_C_DEAD 341 448 - -
Alju07g0401 645 MobiDBLite consensus disorder prediction 494 616 - -
Alju07g0401 645 Pfam DEAD/DEAH box helicase 124 291 IPR011545 GO:0003676|GO:0005524
Alju07g0401 645 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 174 460 IPR027417 -
Alju07g0401 645 Gene3D - 320 480 IPR027417 -
Alju07g0401 645 FunFam ATP-dependent RNA helicase RhlE 94 308 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju07g0401 Alju-ChrAlju07 4876517 4880895 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju07g0401 105 471 Eukaryotic Initiation Factors Gene Family AT3G19760 33.602 1.11e-68 228