Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju07g0330 ATGGAGGAGGAAGTAGAAGAGTACCACCAAAGTGATTCTATGGAGTCAGAGGATAATCATTCTTTGGATTCTAAGCCAGCCTGTGGGTCAGCAGGTCCTTCTGGGATCTCTCCACATAATGTTGATAAAAAAGTGGAAAGCAGTGCTTGGGGGATATCGCATGGGGCTGGTGCACATCATGCATCTAGTGATGTTAGCTTGTTTTCTAGTTCTCTACCTGTTCTTCCACATGAAAAGTTGAATTTCCCTGATTCAGTGCGTTATGGCCAACCTTTTGATGATAACATGCCAATGCTTAATCAAGACCACAAAGAAGTTGAGGGGTATGATCCACTTGAAGATGTTGAAACCAATGCTATTGGAAACATACTTCCTGATGATGAAGAAGAGCTATTAGCTGGGATAATGGATGATTTTGACCTCAGTAGATTGCCCAGCCAACTGGAGGATATGGATGAAAATGATTTGTTTGGTAGTGGAGGAGGGTTAGAAATGGATTTTGAGCCCCAAGAGAGTCTTAAGATTGGAATGTCAAAGATGAGCATTACTGATGGAGTTACTTCAAACGGTATTGGCCATTATGTACTTCCAAATGGTGTAGGACCTGTGGCTGGGGAGCATCCCTATGGAGAACATCCATCGAGAACATTATTTGTGAGAAACATTAATAGTAATGTTGAGGATTCTGAATTAAGATCACTATTTGAGCTATATGGGGATATTAGAACTTTGTACACTGCATGCAAGCATAGGGGTTTTGTGATGATATCTTACTATGATATTCGAGATGCTCGTACTGCGATGCGTGCTTTACAAAACAAGGCCTTGAGACGAAGAAAACTTGACATTCATTTTTCAATTCCTAAGGACAACCCTTCTGAAAAAGACATCAACCAAGGAACTCTTGTAGTGTTCAATTTGGATCCATCAGTATCAAATGACGATCTTCGTCTAATATTTGGGGCTTATGGGGAGGTCAAAGAGATAAGGGAAACACCACATAAGAGACATCATAAATTTATTGAATTTTACGATGTTAGAGCAGCTGAGGCAGCACTTAAGGCATTAAATCGATGTGATATTGCAGGGAAACGCATCAAACTTGAACCTAGCCGTCCTGGTGGGGCGAGAAGAAATTTGATGCAACAACTGAGTCAAGAGCTGGACCTAGATGAAGCACGGACTTTTAGACATCAAGTAGGCTCACCAATGGCCAATTCTCCTCCCGGTAACTGGGCACAATTTGGCAGTCCAGTTGAACATAGTTATTCAAGTTCTTTTAGCAAGTCTCCAGTAAATAGCAACCCTTCATCTGGATTGGCCGCAATTCTTTCCCCTCACGCATCAAACTCTACAAAGATTGCTCCAATTGGCAAGGACTCAGGAAGAGTTAATAGTTCAAATCAGATATTTACAAATGCAGTCTCAACACAAGGAGTAGCTTTTCAGAATTTACTGTCCTTTCCCGAGCTGAAAGCGAATGCAAGTTCTAGACCCATTGCTACTTTTGGTGAATCAAGCTCAACTCCATCAAGCATTGGAACACTATCTGGTCCTCAATTTCTTTGGGGAAGTCCAACTACTTCTTACACGGAGCATTCAAACACTTCTGCTTGGTCTTCTTCTTCTGCTGGGCTCCCTTTTACATCTAGTGGTGAGAAGCAGGGTTTCTCATATACTAATAGACACAATTCCTTTCTTGGTACCCTCTCCCATCATCATGTGGGATCTGCTCCTTCTGGCCTTCCTCTTGATAGGCATTTTAGCTATTTCCCAGAGTCACCAGAAACTTCTTTCATGAGTCCAGTTTCATATGGGAGTATGAATCACAGTGATGGAAGCTTTATGAACATGGGTGCTCGTCCGGCTACTGGGGTTATTGGTCTTTCAGGAAATACAACTGAAATTAGTTCACCTAATTTCAGGTTGATGTCACTGCCCAGGCATAGTTCCTTGTTTCTTGGAAATGGTTCTTATTCTGGAGGGGTTGCAAATAATGAGGGGTTTACTGAACGTGGTCGGAATCGGCGACCTGAAAATAGTGTGACCCAAATTGATAGCAAGAAGCAGTATCAACTTGATCTAGACAAAATTATCAGTGGGGAAGATACAAGGACTACTTTAATGATTAAAAACATCCCTAATAAGTACACCTCAAAGATGCTGCTGTCTGCAATTGATGAGAACCACTGCGGCACTTATGACTTTCTCTACTTGCCCATTGACTTTAAGAACAAATGTAATGTGGGTTATGCTTTCATCAATATGGTGTCTGCTTCACATATTGTTCCCTTCTATAAGGAATTTAATGGGAAGAAATGGGAAAAATTTAATAGTGAAAAAGTTGCATCACTGGCTTATGCACGGATCCAGGGAAAGGCAGCACTTGTGATTCACTTCCAAAATTCAAGCTTGATGAACGAGGATAAGAGATGCAGGCCTATTCTCTTTCATTCAGAGGGCCAAGAGATTGTTGACCAGGAACCTTTCTTATCGAGCAATTTGAATATTTGCATCCGCCAACCAGATGGGTCATACTCAGGCGATTTGTTGGAAAGCCCGAAGGGCGATTTGGATGACAAGCTGTAG 2589 0.4175 MEEEVEEYHQSDSMESEDNHSLDSKPACGSAGPSGISPHNVDKKVESSAWGISHGAGAHHASSDVSLFSSSLPVLPHEKLNFPDSVRYGQPFDDNMPMLNQDHKEVEGYDPLEDVETNAIGNILPDDEEELLAGIMDDFDLSRLPSQLEDMDENDLFGSGGGLEMDFEPQESLKIGMSKMSITDGVTSNGIGHYVLPNGVGPVAGEHPYGEHPSRTLFVRNINSNVEDSELRSLFELYGDIRTLYTACKHRGFVMISYYDIRDARTAMRALQNKALRRRKLDIHFSIPKDNPSEKDINQGTLVVFNLDPSVSNDDLRLIFGAYGEVKEIRETPHKRHHKFIEFYDVRAAEAALKALNRCDIAGKRIKLEPSRPGGARRNLMQQLSQELDLDEARTFRHQVGSPMANSPPGNWAQFGSPVEHSYSSSFSKSPVNSNPSSGLAAILSPHASNSTKIAPIGKDSGRVNSSNQIFTNAVSTQGVAFQNLLSFPELKANASSRPIATFGESSSTPSSIGTLSGPQFLWGSPTTSYTEHSNTSAWSSSSAGLPFTSSGEKQGFSYTNRHNSFLGTLSHHHVGSAPSGLPLDRHFSYFPESPETSFMSPVSYGSMNHSDGSFMNMGARPATGVIGLSGNTTEISSPNFRLMSLPRHSSLFLGNGSYSGGVANNEGFTERGRNRRPENSVTQIDSKKQYQLDLDKIISGEDTRTTLMIKNIPNKYTSKMLLSAIDENHCGTYDFLYLPIDFKNKCNVGYAFINMVSASHIVPFYKEFNGKKWEKFNSEKVASLAYARIQGKAALVIHFQNSSLMNEDKRCRPILFHSEGQEIVDQEPFLSSNLNICIRQPDGSYSGDLLESPKGDLDDKL 862
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju07g0330 862 Pfam RNA recognition motif 2 705 801 IPR007201 -
Alju07g0330 862 Gene3D - 299 395 IPR012677 -
Alju07g0330 862 CDD RRM1_MEI2_like 214 290 IPR034453 -
Alju07g0330 862 SUPERFAMILY RNA-binding domain, RBD 212 375 IPR035979 GO:0003676
Alju07g0330 862 SMART rrm1_1 216 284 IPR000504 GO:0003723
Alju07g0330 862 SMART rrm1_1 301 369 IPR000504 GO:0003723
Alju07g0330 862 SMART rrm1_1 707 783 IPR000504 GO:0003723
Alju07g0330 862 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 302 367 IPR000504 GO:0003723
Alju07g0330 862 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 217 281 IPR000504 GO:0003723
Alju07g0330 862 Gene3D - 204 298 IPR012677 -
Alju07g0330 862 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 300 373 IPR000504 GO:0003723
Alju07g0330 862 CDD RRM3_MEI2_like 708 793 IPR034454 -
Alju07g0330 862 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 215 288 IPR000504 GO:0003723
Alju07g0330 862 SUPERFAMILY RNA-binding domain, RBD 707 792 IPR035979 GO:0003676
Alju07g0330 862 MobiDBLite consensus disorder prediction 1 43 - -
Alju07g0330 862 CDD RRM2_MEI2_like 299 369 - -
Alju07g0330 862 FunFam MEI2-like protein 5 isoform 2 204 298 - -
Alju07g0330 862 PANTHER RNA RECOGNITION MOTIF-CONTAINING 27 822 - -
Alju07g0330 862 FunFam Protein MEI2-like 1 299 394 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju07g0330 Alju-ChrAlju07 3947019 3954310 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju07g0330 210 386 Eukaryotic Initiation Factors Gene Family AT3G16380 24.747 1.73e-09 59.3