Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju07g0238 ATGTTAAATCGAAGTGGTGGGAGGGACCGGTTTAGAAGGGATTACCCTTCAAGATTTGAAGATAAAGGCAACAATGGGCGTAGCAATAGCAGCAACCCACCTTCCAGGCACCTTTGGGTTGGGAATCTAGCACACAGTATAACAGAGAATGAACTTGCTCGCCATTTTCTACAATTTGGGCCACTTGAAAGTGTAGCATTCCAACCTGGTCGTAGCTATGCTTTCATCAATTTCAGAAGGGACGAAGATGCTATTGATGCTTTGAAAGAACTTCAAGGTTATCCTGTTGCAGGCAACCCGCTTAGAGTTGAATTTGCTAAGGCGGAGAAGCCACCGTCACTAACTCGTGATGAAGATTACTCTTGGGATGAAAGAAGCTCAGGGAGAAGAGGATCTCCTTTCACTCAAAGAGAGTTCAGAGGACGCCATGGTAGTCCTGAGCCTCCTTATCCTGACAAATCCAAGCTGACTGATAAAAACCCAGAACCCAGTGAGGTTTTGTGGATAGGATTTCCATCTCAATTGAATGTGGATGATTTAGCTTTGAGAAGGGTTTTTTCTCCATTTGGTGAGATCGAGAAGATTACAACATTTCCAGGTCGTAGTTATGCTTTTGTTCGTTTTAGGAGTCTAACATCAGCACGCAGAGCTAAAGATGCTCTTCAGGGAAAGTTATTTGGAAATCCTCGTGTACATATTTGTTTTGCAAAGAGTGAAACTGGTTCATCAAGCGGTGGGAGGTTTTCAACTAACACCCCGTCATCCCCATTTTACACATCAAGCGGTCGTCATGGATCGAGTGAGAACTTGAGACAAGATAGGGGTATTGCAGGCTTCAGTGGAGACCGTAGTGCTAGTTCCCCTAATATTTTCCCAAAATGGGACTTGGCAGATTCTGATACTTATGATTCAGATGGAAGGGGTTCTTCCCGGGCCGGTGGATTCAGTTCATATGAACAAAGGAGGGTTGGTGAAAGGGTGCCACCACTCGGAGTGCTACAAGACAGTTTTGAACACTCAATAAGTCCTTCTAGAGATAGACAAGCTCATCTAGGTACTTTTCCTCAGAGATACCCTCAAAAGCATGCATTATTTGAAGATCCACGGGACTTTCCGGATGATGTGTATTATCAACATGACACTAAAAAACTGAAGACTGTATCTCTTCCTCCTGAAAAGGAGCTTCCAGAGTATCCTCTTTCTGATTTAGAAAGGCAGAGGCGTCCGCTCCCATGGTTATTAACTGATTTACCCCAACATGAGGTCCTTGATCAAAGAATTGATGCTGGACCTGTTGTGCATAGACAAACTTTTGATCCCAGACCAAATTCCCCTTTTGGTCGGTCAGATAGGAGCGAGCGCTGGAAGCCTAGTGATAGTTTCCATGTGGCTCCCAGTGCTCTGCAATCGTATTCTATTGAGAAGAGAAGACTCACACCTGAACCTAGTAGCCCATCTCTAACTGAGTGGAAATGGGAAGGAACCATTGCCAAAGGTGGAACACCTGTTTGTCGTGCTCGCTGCTTCCCTGTGGGAAAAGTCATGGATATCATGTTACCTGAATTCTTGGATTGCACGGCGAGGACGGGTCTAGACATGCTTTCAAAACATTATTACCAAGCGGCTGGTGCTTGGGTTGTTTTCTTCGTGCCTGAAAGCGATGTTGACATTGAATATTACAATGAATTCATGCATTACCTGGAGGAAAAGCGTAGGGCTGCAGTTGCCAAGTTAGACGACAGGAATACCTTGTTTCTTGTACCTCCATCAGATTTCTCAGAGAAAGTACTGAAGGTACCCGGAAAGTTGAGCATATCTGGTGTGGTTTTAAGGTTGGAGCATCCTGGTTCAGCTCAAGGGTCCATGCACAATCAAAATGAAGCAAAAGATGGAAACTTCTTGTCATATCATGGTGATGCATTGTATCCAAATCCACCAATATCATCAGCTCGTAGTCCCCCGCCATTTACATCCGTTCCTGAAGGAATGAGCAATCTTTCTTTCCTTGGAAATAAGAATTCAGCGGCCATGCCTACTGCAGTTTCTGGTTCAGCTCATGCCGTAGTTGGCACATCTGGTTCTTCTCATGATGGAAGAAGGGGACAGGATTATCATCCAGTTCAACAGCAGAACCATACATCGGTCCCGAATTGGTCTGCTAACAATCTTCAGACCTTGATATCCAATAGAAATTTGCCATCACAACTATCAAATAGTTCTTCTGAACCTCTTACTCAGGATCATCTACTGAGCCAAATTGGTCTGCCTGGAGGATCCCTGCAACAAGAGCAGCTTGCACAACTAGCGGCATCTCTTCTTGAGCAGCAGAGGCAATCAGGAAGCACTCTGAGTGTATCCGCCCCGGATGATCCGAGGCAAACTCATAGAGCAAATGGGTCTGACACCACCTCCAGACCATCCCAAAAATACCCCGTTCAAAATAACTCAATGAATCCTGAACTCGCAACATCTCAGTATGGACAGCTTCTACAACTTCAAAAGCAACAGCAGATGTCAAACGTGCTATCTCAAGGATCACAGACGGTTCAAAGAGAGCCGCAGAGAGTGGCCAACGGGAACCAGCAACCGCTAACTGGTGGTAGTAACTTGCAGCAAGATGCAGAAGCAGATCCACAGAAGCGTCTACAAGCGACATTACAGTTGGCTGCAGTTCTTCTCCAGCAAATTCAGCAAGGGAAAGGAAGTTAA 2709 0.4529 MLNRSGGRDRFRRDYPSRFEDKGNNGRSNSSNPPSRHLWVGNLAHSITENELARHFLQFGPLESVAFQPGRSYAFINFRRDEDAIDALKELQGYPVAGNPLRVEFAKAEKPPSLTRDEDYSWDERSSGRRGSPFTQREFRGRHGSPEPPYPDKSKLTDKNPEPSEVLWIGFPSQLNVDDLALRRVFSPFGEIEKITTFPGRSYAFVRFRSLTSARRAKDALQGKLFGNPRVHICFAKSETGSSSGGRFSTNTPSSPFYTSSGRHGSSENLRQDRGIAGFSGDRSASSPNIFPKWDLADSDTYDSDGRGSSRAGGFSSYEQRRVGERVPPLGVLQDSFEHSISPSRDRQAHLGTFPQRYPQKHALFEDPRDFPDDVYYQHDTKKLKTVSLPPEKELPEYPLSDLERQRRPLPWLLTDLPQHEVLDQRIDAGPVVHRQTFDPRPNSPFGRSDRSERWKPSDSFHVAPSALQSYSIEKRRLTPEPSSPSLTEWKWEGTIAKGGTPVCRARCFPVGKVMDIMLPEFLDCTARTGLDMLSKHYYQAAGAWVVFFVPESDVDIEYYNEFMHYLEEKRRAAVAKLDDRNTLFLVPPSDFSEKVLKVPGKLSISGVVLRLEHPGSAQGSMHNQNEAKDGNFLSYHGDALYPNPPISSARSPPPFTSVPEGMSNLSFLGNKNSAAMPTAVSGSAHAVVGTSGSSHDGRRGQDYHPVQQQNHTSVPNWSANNLQTLISNRNLPSQLSNSSSEPLTQDHLLSQIGLPGGSLQQEQLAQLAASLLEQQRQSGSTLSVSAPDDPRQTHRANGSDTTSRPSQKYPVQNNSMNPELATSQYGQLLQLQKQQQMSNVLSQGSQTVQREPQRVANGNQQPLTGGSNLQQDAEADPQKRLQATLQLAAVLLQQIQQGKGS 902
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju07g0238 902 CDD SPOC_FPA-like 491 610 - -
Alju07g0238 902 PANTHER RNA RECOGNITION MOTIF-CONTAINING 26 896 - -
Alju07g0238 902 MobiDBLite consensus disorder prediction 616 635 - -
Alju07g0238 902 FunFam RNA recognition motif (RRM)-containing protein 151 244 - -
Alju07g0238 902 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 36 108 IPR000504 GO:0003723
Alju07g0238 902 MobiDBLite consensus disorder prediction 22 36 - -
Alju07g0238 902 MobiDBLite consensus disorder prediction 107 161 - -
Alju07g0238 902 SUPERFAMILY RNA-binding domain, RBD 154 239 IPR035979 GO:0003676
Alju07g0238 902 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 176 230 IPR000504 GO:0003723
Alju07g0238 902 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 38 101 IPR000504 GO:0003723
Alju07g0238 902 SUPERFAMILY RNA-binding domain, RBD 24 111 IPR035979 GO:0003676
Alju07g0238 902 CDD RRM_SF 38 104 - -
Alju07g0238 902 MobiDBLite consensus disorder prediction 686 716 - -
Alju07g0238 902 MobiDBLite consensus disorder prediction 779 819 - -
Alju07g0238 902 MobiDBLite consensus disorder prediction 434 460 - -
Alju07g0238 902 Gene3D - 152 244 IPR012677 -
Alju07g0238 902 MobiDBLite consensus disorder prediction 240 284 - -
Alju07g0238 902 MobiDBLite consensus disorder prediction 837 878 - -
Alju07g0238 902 MobiDBLite consensus disorder prediction 135 160 - -
Alju07g0238 902 Gene3D - 11 147 IPR012677 -
Alju07g0238 902 CDD RRM_SF 167 233 - -
Alju07g0238 902 MobiDBLite consensus disorder prediction 240 266 - -
Alju07g0238 902 MobiDBLite consensus disorder prediction 1 21 - -
Alju07g0238 902 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 165 238 IPR000504 GO:0003723
Alju07g0238 902 MobiDBLite consensus disorder prediction 1 36 - -
Alju07g0238 902 SMART rrm1_1 37 104 IPR000504 GO:0003723
Alju07g0238 902 SMART rrm1_1 166 234 IPR000504 GO:0003723
Alju07g0238 902 MobiDBLite consensus disorder prediction 297 323 - -
Alju07g0238 902 MobiDBLite consensus disorder prediction 109 126 - -
Alju07g0238 902 Pfam SPOC domain 486 600 IPR012921 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju07g0238 Alju-ChrAlju07 2781492 2790629 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju07g0238 37 237 Eukaryotic Initiation Factors Gene Family AT4G34110 23.832 5.95e-07 51.2