Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju07g0162 ATGATGTGCCTTTGGATCTCGATGAAATCGCTTATTGAAAATATTTATGGTTTTTCTCATAAGTGCGTAATTCTGGATAAAATGCAATCGGATAATGGCAAGTTATTTATTGGTGGAATATCATGGGACACAAATGAAGAGCGACTTAGGGAGTATTTCAGTTCTTATGGGGAGATTGTGGAAGCAGTGATAATGAAGGATCGGACAACTGGTAGAGCTCGTGGATTTGGTTTTGTAGTTTTTGCTGACCCAGCTGTTGCAGATAGAGTTATAAACGAGAAGCACAACATTGATGGAAGGATGGTTGAGGCAAAGAAGGCTGTTCCTAGAGATGACCAGAACATACTGAACAGAAGCAGTAGTAGCATCCAGGGTTCTCCTGGTCCAGGACGCACTAGAAAGATATTTGTAGGAGGTCTAGCACCAACAGTTACAGAGAGTGATTTCAAGAAGTACTTTGATCAATTTGGGACCATAACTGATGTTGTAGTGATGTATGATCACAACACTCAGAGGCCAAGAGGCTTTGGATTTATCACTTATGATTCTGAGGAAGCTGTTGAGAATGTCTTACTTAAGACATTCCATGAACTGAATGGTAAAATGGTTGAGGTCAAGCGGGCAGTTCCTAAGGAATTATCACCAGGACCAAACCGCAGCCCACTTAGCGGATATAATTATGGTATGGGTAGGGTCAATAGTTTCCTAAATGGCTTCACTCAGGGGTATACTCCAAGTGCTGTTGGAGGCTATGGACTGAGGATGGATGGTAGATTCAGTCCTGCAGCAAGTGGTCGAAGTGGATTTGCTCCGTTTGGATCTGGTTATGGAACGAGTATGAATTTTGAGCCTGGCTTGAACCCTGGATTTGGTGGGAATGCAAACTTCAATAGCAATCTTAGCTATGCTCGGGGATTAAATCCTTATTATGTTGGCAGTTCAAATAGGTTTGGGAGTCCTATTGGGTATGATGGTGGTAATGGAGGAAACAATTCTTTCTTCAGCTCTGCAACTCGAAATTTGTGGGGGACTGGTGGTCTTAATTATGGAACGGGCTCTGCAAATTCCAATAACGTGTACATGGGATCGGGAAGTGGGAATGCTGGAGGAAACACATTTGGGACTGGAGTGAACTGGGGTTCTTCAGGAGTTTCTGGTCAAGTTGGTTTGAACAATGCGCCACAGAGTAGTGGCAACCTTCGCTATGGAGGTGGGGACAGTAGTTATGGTTTGGGGGCTGGAGGGTATGGAGGGAACGGTGGCAGCAGTATTGCCCCTACATCATCATACTCCTCATCAAATGGTGTGTTTGATGGGGCCTTTACTGATTTTTACAATAGTAGTTCAGTCTATGGGGATCCCACTTGGCGATCTTCAAACTCTGAGCGAGATGGGTCTGGTCCCTTTGGTTATGGTCTTGGTAGCGCAGCTTCAGATGTTTCTGCCAAAAGCCCTCCTGGTTATGTTGGTGGTTATACTGTTAATAAGAGACAGCCAAATAGAGGAATTGCTACATAG 1518 0.4414 MMCLWISMKSLIENIYGFSHKCVILDKMQSDNGKLFIGGISWDTNEERLREYFSSYGEIVEAVIMKDRTTGRARGFGFVVFADPAVADRVINEKHNIDGRMVEAKKAVPRDDQNILNRSSSSIQGSPGPGRTRKIFVGGLAPTVTESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVENVLLKTFHELNGKMVEVKRAVPKELSPGPNRSPLSGYNYGMGRVNSFLNGFTQGYTPSAVGGYGLRMDGRFSPAASGRSGFAPFGSGYGTSMNFEPGLNPGFGGNANFNSNLSYARGLNPYYVGSSNRFGSPIGYDGGNGGNNSFFSSATRNLWGTGGLNYGTGSANSNNVYMGSGSGNAGGNTFGTGVNWGSSGVSGQVGLNNAPQSSGNLRYGGGDSSYGLGAGGYGGNGGSSIAPTSSYSSSNGVFDGAFTDFYNSSSVYGDPTWRSSNSERDGSGPFGYGLGSAASDVSAKSPPGYVGGYTVNKRQPNRGIAT 505
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju07g0162 505 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 35 96 IPR000504 GO:0003723
Alju07g0162 505 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 135 192 IPR000504 GO:0003723
Alju07g0162 505 SUPERFAMILY RNA-binding domain, RBD 131 231 IPR035979 GO:0003676
Alju07g0162 505 Gene3D - 130 216 IPR012677 -
Alju07g0162 505 PANTHER RNA-BINDING PROTEIN MUSASHI HOMOLOG RBP6 28 501 - -
Alju07g0162 505 SMART rrm1_1 134 206 IPR000504 GO:0003723
Alju07g0162 505 SMART rrm1_1 34 105 IPR000504 GO:0003723
Alju07g0162 505 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 33 109 IPR000504 GO:0003723
Alju07g0162 505 FunFam Heterogeneous nuclear ribonucleoprotein 1 130 217 - -
Alju07g0162 505 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 133 210 IPR000504 GO:0003723
Alju07g0162 505 FunFam Heterogeneous nuclear ribonucleoprotein 1 32 114 - -
Alju07g0162 505 SUPERFAMILY RNA-binding domain, RBD 23 131 IPR035979 GO:0003676
Alju07g0162 505 CDD RRM1_hnRNPA_hnRNPD_like 35 105 - -
Alju07g0162 505 MobiDBLite consensus disorder prediction 454 505 - -
Alju07g0162 505 CDD RRM2_Hrp1p 134 211 - -
Alju07g0162 505 Gene3D - 31 115 IPR012677 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju07g0162 Alju-ChrAlju07 2009840 2014586 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju07g0162 35 212 Eukaryotic Initiation Factors Gene Family AT2G36660 31.746 7.41e-15 75.5