Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju07g0160 ATGAAGGATCGGACAACTGGTAGAGCCCGTGGATTCGGTTTTGTAGTTTTCGCAGACCCAACTATTGCAGAGAGAGTCATAAAAGAGAAGCACAGCATTGATGGAAGGATGGTTGAGGCCAAGAGGGCTGTTCCAAGGGATGACCAGAGCATACTGAGTAGAAACAGTGGTAGCAACCATGGTTCTCCTGGTCCAGGCCGCACAAAAAAGATATTTGTTGGTGGTTTAGCATCTAGTGTTACGGAGAGTGATTTCAAGAAGTACTTTGATCAATTTGGGACAATAACGGATGTTGTAGTTATGTACGATCACAACACTCAGAGGCCAAGAGGCTTTGGATTTATCACTTATGATTCTGAAGAAGCTGTTGAGAAGGTCTTACTTAAGACCTTCCATGAACTAAATGGCAAAATGGTTGAGGTCAAGCGTGCAGTTCCTAAGGAACTATCACCTGTGCCAAACCGAAGCCCACTGACTGGATATAACTATGGAATGAATAGGGTGAATAGTTTCCTCACTGGCTTCACCCAGGGCTATACTCCAGGTGCTGTTGGAGGCTTTGGACTCAGGGTGGATGGTAGATTCAGTCCTGTTGCAAGTGGCCGAAGTGGGTTTTCACCATTTGGATCTGGTTATGGGATGAATATGAATTTTGAGCCTGGTTTGAGCCCTGGATTTGGAGGGAATGCAAATTTCAATAACAATCTTAATTATGGTCGGGCAATAAATCCATATTATATTGGAAGCTCAAGTAGGTTTGGGAGTCCTGTTGGGTACGATGGTAATAATGGAGGAAACAATTCTTTCTTCAGCTCTGTAACTCGGAACTTGTGGGGAACTGGTAGCCTTAATTATGGAACAAGTTCTGCTAATTCCAATGCATACACAGGATCAGGAAGTGGGAATGTTGGGGGAAATGTTTATGGCAATGCTGGAGCCAATTGGGGTTCTTCAGCAATTTCTGCTCAAGGTACTATGAACAATGTGTCACAAAGTAGTGGCGGTAACCTTGGCTTTGGGGGAGACGACAATAGTTATGGTTTGGGAACTGGAGGGTATGGAAGAAACAGTGGTACAAATATTGCTCCAACATCATCACACTCTGCATCAAATGGTGGTTTTGATGGAGCTTTTGCTGATTTATACAATAATAGTTCAGTTTACGGGGACCCCACTTGGCAGTCTTCAAATTCTGAGCTAGATGGATCTGGTCCCTTTGGTTATGGGCTTGGTGCTGCAGCTTCAGATGTTTCTGCTAAAAGCCCTCCTGGTTATGTTGGGGGTTATACTGTTAATAAGAGACAGCCAAATAGGGGAATTGTTACATAG 1329 0.4394 MKDRTTGRARGFGFVVFADPTIAERVIKEKHSIDGRMVEAKRAVPRDDQSILSRNSGSNHGSPGPGRTKKIFVGGLASSVTESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVEKVLLKTFHELNGKMVEVKRAVPKELSPVPNRSPLTGYNYGMNRVNSFLTGFTQGYTPGAVGGFGLRVDGRFSPVASGRSGFSPFGSGYGMNMNFEPGLSPGFGGNANFNNNLNYGRAINPYYIGSSSRFGSPVGYDGNNGGNNSFFSSVTRNLWGTGSLNYGTSSANSNAYTGSGSGNVGGNVYGNAGANWGSSAISAQGTMNNVSQSSGGNLGFGGDDNSYGLGTGGYGRNSGTNIAPTSSHSASNGGFDGAFADLYNNSSVYGDPTWQSSNSELDGSGPFGYGLGAAASDVSAKSPPGYVGGYTVNKRQPNRGIVT 442
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju07g0160 442 MobiDBLite consensus disorder prediction 49 63 - -
Alju07g0160 442 MobiDBLite consensus disorder prediction 423 442 - -
Alju07g0160 442 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 1 45 IPR000504 GO:0003723
Alju07g0160 442 Gene3D - 66 151 IPR012677 -
Alju07g0160 442 Gene3D - 1 51 IPR012677 -
Alju07g0160 442 PANTHER RNA-BINDING PROTEIN MUSASHI HOMOLOG RBP6 1 438 - -
Alju07g0160 442 MobiDBLite consensus disorder prediction 44 69 - -
Alju07g0160 442 SUPERFAMILY RNA-binding domain, RBD 68 156 IPR035979 GO:0003676
Alju07g0160 442 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 71 128 IPR000504 GO:0003723
Alju07g0160 442 SUPERFAMILY RNA-binding domain, RBD 1 67 IPR035979 GO:0003676
Alju07g0160 442 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 69 146 IPR000504 GO:0003723
Alju07g0160 442 CDD RRM2_Hrp1p 70 147 - -
Alju07g0160 442 SMART rrm1_1 70 142 IPR000504 GO:0003723
Alju07g0160 442 FunFam Heterogeneous nuclear ribonucleoprotein 1 66 153 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju07g0160 Alju-ChrAlju07 1997782 2004183 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju07g0160 1 267 Eukaryotic Initiation Factors Gene Family AT1G71770 26.282 7.87e-10 59.3