Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju07g0019 ATGAATGATGAAACTAATGGCTCTAGTATCTCAACTGATGTAAATGTTCTATCTTGCAATGCATTTTTAGGAAACGAATATCCCTTCTCTCTTCCTCTGCCTCAAACCCTAGCTCGTCTCCCAAAACGAGATTCCACCGCCATGGCTAAGAAGCGAAAGCTTCGATCATCTGAACCCGAATCTGCCAAGATCTCTGATTCACAACCTGAACAACCCCAAGAAAAGCAAATCCACGAGGAAGTTAGAATGGACGAACAACCAAAGCCCGTAGCAACCCCTGAAGAGCACCAGGGACACGAAAGGATGGCCGTGGATGATGATACGCATCAGGAAGATGTCAAATTAGAAGAAAACGCGGATGCAAGTGTACCTCCAGAAGTTCACCCTCAAGAACAAGATAGCGAGCACCCCGAAACGGCGGAAGTTACAGCCGATGCTACCCCATCTGAATCAGCTCAGGTTGAAGCGAATGGAGCCGAGGAAGGCAACGAGAACGATGGTGATGTTGAGGTTTTGGACGAAGAGGAGCCTATAGAGAAGCTTCTTGAGCCTTTTACGAAGGAGCAGCTCTACACTCTTGTCAGGCAAGCTGCAGAGAAGTACCCGGATTTTATCGACAACGTCCGTCAGCTGGCGGACGTGGACCCTGCCCACCGAAAAATCTTCATCCACGGTCTTGGCTGGGACACCACTGCTGAAACCCTTACGAGTGTTTTTGGGAAGTACGGCGAGATTGAGGATTGTAAGGCTGTCACTGACAGGGTCTCTGGGAAATCAAAAGGTTATGCCTTCATCTTGTTCAAGCATAGAAGTGGGGCTCGGAAGGCGCTGAAACAGCCACAGAAAAAGATTGGGAACCGAACCACATCATGTCAATTGGCATCCGCGGGACCAGTCCCCTCTCCTGCTGTAGTGGTCCCACCGGTGTCTGAATATACTCAAAGGAAGATCTTTGTCAGCAATGTAAGTGCAGAATTCGATCCCCAAAAATTGTTTGAGTTCTTCAGTCAATTTGGGGAGATAGAGGATGGTCCTTTGGGTCTTGATAAACAGACGGGCAAGCCAAAGGGATTTGCATTGTTTGTATACAAGTCAGTAGATTGCGCTAAGAAGGCTTTGGAAGAACCGCACAAAAACTTTGAAGGACATACATTGTATTGTCAGAAGGCTGTTGATGGTCCTAAGGGAAACAAGGGATATCAGCATCACCAGCAGCAGCATCATTCTCATCATCATCAGCCTCAGTACCAGTCAAGAAAGGAGAAGAATAAGTATCAGTCTGGCGGGCATGGACCAGGACCCGGACACTTGATGGCACCCTCAGCTCCTTCTGCAGGTTTCAACCCTGGAGTGGCTGCACAGGGGCTAAATCCGGCACTTGGGCAGGCCTTGACTGCTTTGCTTACTACCCAAGGTGCTGGGCTAGGGCTGGGTAACCTGCTTGGAGGTCTTGGTGGTGCACCCTCAAACCAGGCTGGGCCTCCTACTGGATATGTCAATCAGCCTGCTGTGGGCTACGGGAACCAACCAGGAATGCAAGGGGGATACCAAAATCCGCAAATGGGGCAGGGCAGTGGTGTTAGGCCTCACCCTGGCCCTGGTGCTCCTTACATGGGTCATTAG 1623 0.4991 MNDETNGSSISTDVNVLSCNAFLGNEYPFSLPLPQTLARLPKRDSTAMAKKRKLRSSEPESAKISDSQPEQPQEKQIHEEVRMDEQPKPVATPEEHQGHERMAVDDDTHQEDVKLEENADASVPPEVHPQEQDSEHPETAEVTADATPSESAQVEANGAEEGNENDGDVEVLDEEEPIEKLLEPFTKEQLYTLVRQAAEKYPDFIDNVRQLADVDPAHRKIFIHGLGWDTTAETLTSVFGKYGEIEDCKAVTDRVSGKSKGYAFILFKHRSGARKALKQPQKKIGNRTTSCQLASAGPVPSPAVVVPPVSEYTQRKIFVSNVSAEFDPQKLFEFFSQFGEIEDGPLGLDKQTGKPKGFALFVYKSVDCAKKALEEPHKNFEGHTLYCQKAVDGPKGNKGYQHHQQQHHSHHHQPQYQSRKEKNKYQSGGHGPGPGHLMAPSAPSAGFNPGVAAQGLNPALGQALTALLTTQGAGLGLGNLLGGLGGAPSNQAGPPTGYVNQPAVGYGNQPGMQGGYQNPQMGQGSGVRPHPGPGAPYMGH 540
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju07g0019 540 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 317 385 IPR000504 GO:0003723
Alju07g0019 540 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 221 288 IPR000504 GO:0003723
Alju07g0019 540 MobiDBLite consensus disorder prediction 392 446 - -
Alju07g0019 540 MobiDBLite consensus disorder prediction 508 524 - -
Alju07g0019 540 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 315 393 IPR000504 GO:0003723
Alju07g0019 540 SUPERFAMILY RNA-binding domain, RBD 208 297 IPR035979 GO:0003676
Alju07g0019 540 MobiDBLite consensus disorder prediction 144 158 - -
Alju07g0019 540 SMART rrm1_1 316 388 IPR000504 GO:0003723
Alju07g0019 540 SMART rrm1_1 220 292 IPR000504 GO:0003723
Alju07g0019 540 Gene3D - 307 433 IPR012677 -
Alju07g0019 540 MobiDBLite consensus disorder prediction 72 121 - -
Alju07g0019 540 MobiDBLite consensus disorder prediction 401 415 - -
Alju07g0019 540 SUPERFAMILY RNA-binding domain, RBD 301 415 IPR035979 GO:0003676
Alju07g0019 540 MobiDBLite consensus disorder prediction 508 540 - -
Alju07g0019 540 MobiDBLite consensus disorder prediction 44 60 - -
Alju07g0019 540 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 219 296 IPR000504 GO:0003723
Alju07g0019 540 Gene3D - 211 297 IPR012677 -
Alju07g0019 540 MobiDBLite consensus disorder prediction 25 170 - -
Alju07g0019 540 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 3 SUBUNIT G 149 395 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju07g0019 Alju-ChrAlju07 316987 320796 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju07g0019 294 394 C2H2 Transcription Factor Family AT2G19380 28.713 1.38e-08 55.5