Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju06g2845 ATGCCCGAACAAGAAGACAATCGTCATGCCTCTCTTGAGGAAGGGAAGAAGAGGAAGAGGAAAAGGAATAGACCCCGCAAAGCTGCAACTGAGGAGCAATTGGAACCTCAAGAGTCAAACCAGCATGGGGAGGAAGAAGGCGAAGAAGCCAGAGAGAATGATGGGGCTAAGGAGTCTGCTGAGTTGCGTAAGAAAAAGAAGGATAAAAAGATGAAACGCGGTGGAGAATTGACTGCAGGGGAAATGGGCGGCGATGAGAATGAGGAGGAGGGCGAACAAAGGAAGTCAAAGAATGTTGGGTCTGGAATTATGAGCACTGTGTCGTTTGACTCTCTGGGATTGTCTGAACCTACTTTTAAGGCCATTAAGGATATGGGATTCGAGCATACTACTCAGATTCAAGCAAGATCAATCCCTCCCCTCTTGATTGGGAAAGATGTTCTTGGTGCTGCAAGGACGGGTTCTGGGAAAACTCTTGCTTTTCTAATACCAGCTGTGGAGCTGTTGTACCATGCTCAATTCACTCCGCGAAATGGAACTGGTGTTGTTGTCATCTGCCCTACTAGGGAGCTTGCGATACAGACGCACGCTGTAGCAAAAGAACTTCTCAAGTATCACTCCCAGACTCTTGCATTGGTTATTGGCGGTTCAGCTAGAAAAGGAGAAGCTGAACGAATTGTTAAAGGGGTAAATCTACTGGTGGCAACTCCTGGTCGTCTTCTTGATCATCTTCAAAATACAAAGGGATTCATATACAAGAACTTGAAGTGCCTCATGATTGATGAAGCTGACAGGATATTGGAAGCAAATTTTGAGGAGGAAATGAAGCAGATTATTAAAATCTTGCCCAAGAATAGGCAAACAGCTTTGTTTTCAGCCACCCAAACAAAAAAGGTCGAAGATCTTGCCCGCTTGTCATTTCAGACAACTCCTATCTATGTTGATGTAGATGATGGGAGAACCAAGGTCACTAATGAAGGATTGCAGCAGGGCTATGTTCTTGTTCCCTGTGCCAAGCGTTTTGTTGTTCTCTACTCCTTCTTGAAGAGATATCACTCAAAAAAAAAGATGATGGTCTTTTTCTCTTCATGCAACTCTGTGAAGTTTCATGCAGATCTTCTCAATTATATACAGATTGATTGCTATAATATACATGGAAAACAAAAGCAGCAGACACGTACTACTACCTTCTTTAACTTCTGCAAAGCAGAAAAGGGAATTTTGCTCTGCACTGATGTTGCTGCCCGTGGGCTCGATATCCCTGATGTGGACTGGATTGTGCAGTATGATCCTCCTGATGAACCTAAGGAATATATCCACAGGGTTGGTCGAACAGCTCGTGGGGAAGGTGGCAAAGGAAATGCTTTGCTTTTCCTGATTCCTGAAGAGTTGCAATTTCTTCGCTATCTAAAGGCCGCGAAGGTTCCTGTGAAAGAATATTTATTTGATGAAAAGAAGTTGGCAAATGTGCAGTCTCACCTGGAAAAGTTGGTGGGTAACAATTATTATTTGAACAAGGCAGCTAAAGATGCTTACAGATCATATATTCTAGCATATAATTCACACTCTATGAAGGACATATTTAATGTTCATCGCCTTGATTTACAGGCTGTGGCGGTTTCATTCTGTTTTTCAAATCCGCCAAAGGTGAGTTTAGGCATAGACAGCGGGGCGTCAAAGCATAGGAAGAAAATGCGCAAGATTGAAGGGAGCAGACATGGATTCAGCGACAGCAATCCTTATGGTAACAAAATTGCTACTGGTGATAACCGCCAATTTGTGAGGCATTAG 1791 0.4338 MPEQEDNRHASLEEGKKRKRKRNRPRKAATEEQLEPQESNQHGEEEGEEARENDGAKESAELRKKKKDKKMKRGGELTAGEMGGDENEEEGEQRKSKNVGSGIMSTVSFDSLGLSEPTFKAIKDMGFEHTTQIQARSIPPLLIGKDVLGAARTGSGKTLAFLIPAVELLYHAQFTPRNGTGVVVICPTRELAIQTHAVAKELLKYHSQTLALVIGGSARKGEAERIVKGVNLLVATPGRLLDHLQNTKGFIYKNLKCLMIDEADRILEANFEEEMKQIIKILPKNRQTALFSATQTKKVEDLARLSFQTTPIYVDVDDGRTKVTNEGLQQGYVLVPCAKRFVVLYSFLKRYHSKKKMMVFFSSCNSVKFHADLLNYIQIDCYNIHGKQKQQTRTTTFFNFCKAEKGILLCTDVAARGLDIPDVDWIVQYDPPDEPKEYIHRVGRTARGEGGKGNALLFLIPEELQFLRYLKAAKVPVKEYLFDEKKLANVQSHLEKLVGNNYYLNKAAKDAYRSYILAYNSHSMKDIFNVHRLDLQAVAVSFCFSNPPKVSLGIDSGASKHRKKMRKIEGSRHGFSDSNPYGNKIATGDNRQFVRH 596
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju06g2845 596 SMART ultradead3 126 331 IPR014001 -
Alju06g2845 596 MobiDBLite consensus disorder prediction 26 65 - -
Alju06g2845 596 Pfam DEAD/DEAH box helicase 131 302 IPR011545 GO:0003676|GO:0005524
Alju06g2845 596 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 343 498 IPR001650 -
Alju06g2845 596 PANTHER RNA HELICASE 56 493 - -
Alju06g2845 596 Pfam Helicase conserved C-terminal domain 343 448 IPR001650 -
Alju06g2845 596 Gene3D - 84 319 IPR027417 -
Alju06g2845 596 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 259 267 IPR000629 -
Alju06g2845 596 SMART helicmild6 368 449 IPR001650 -
Alju06g2845 596 CDD SF2_C_DEAD 328 459 - -
Alju06g2845 596 MobiDBLite consensus disorder prediction 567 589 - -
Alju06g2845 596 SMART DUF4217_3 489 552 IPR025313 -
Alju06g2845 596 CDD DEADc_DDX18 118 315 IPR044773 GO:0003724|GO:0005524
Alju06g2845 596 MobiDBLite consensus disorder prediction 1 102 - -
Alju06g2845 596 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 253 463 IPR027417 -
Alju06g2845 596 Gene3D - 324 552 IPR027417 -
Alju06g2845 596 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 105 314 IPR027417 -
Alju06g2845 596 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 138 313 IPR014001 -
Alju06g2845 596 FunFam RNA helicase 324 555 - -
Alju06g2845 596 Pfam Domain of unknown function (DUF4217) 490 550 IPR025313 -
Alju06g2845 596 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 107 135 IPR014014 GO:0003724
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju06g2845 Alju-ChrAlju06 55365582 55370786 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju06g2845 108 467 Eukaryotic Initiation Factors Gene Family AT3G13920 30.748 2.35e-46 167