Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju06g2843 ATGCTGTCTTTCTTTGATCGATTTCATCTTCTTCTATCTGTGTGTTTGGAAGATTCAGGTTCTTCGTCCTCATCGGTTCGACCCCTTACGCCGGTGAGTTTGCTCTTTCTTCGTGAAACGATGGACCCGATGGACATCATTGGGAAATCGAAGGAAGATGCTTCGCTTCCTAAAGCAACTATGACAAAAATTATTAAAGAAATGTTACCCCCTGATGTACGTGTTGCAAGAGATGCTCAAGATCTGTTGATTGAGTGTTGTGTAGAGTTTATAAATCTTGTGTCATCAGAGTCCAACGAAGTCTGTGGCAGAGAGGAGAAAAGGACAATTGCACCTGAGCATGTATTGAAGGCTTTAGAGGTTCTTGGATTTGGTGAGTATATTGAGGAAGTTTATGCAGCATATGAACAGCACAAGATTGAGACCATGCAGGACTCTTTAAAAGGAGGGAAATGGAGCAATGGAGCAGAGATGACGGAGGAGGAAGCTTTAGCAGAGCAGCAAAGGATGTTTGCGGAGGCACGTGCCAGAATGAATGGTGAGGCACTTGCTTCCACCAAGCAGCAGCCGGACGGTGACCAAAGTTTAGAGAGCTGA 597 0.4489 MLSFFDRFHLLLSVCLEDSGSSSSSVRPLTPVSLLFLRETMDPMDIIGKSKEDASLPKATMTKIIKEMLPPDVRVARDAQDLLIECCVEFINLVSSESNEVCGREEKRTIAPEHVLKALEVLGFGEYIEEVYAAYEQHKIETMQDSLKGGKWSNGAEMTEEEALAEQQRMFAEARARMNGEALASTKQQPDGDQSLES 198
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju06g2843 198 Gene3D Histone, subunit A 44 188 IPR009072 GO:0046982
Alju06g2843 198 MobiDBLite consensus disorder prediction 182 198 - -
Alju06g2843 198 PANTHER PROTEIN DR1 HOMOLOG 41 197 IPR044255 -
Alju06g2843 198 FunFam Negative cofactor 2 beta 46 183 - -
Alju06g2843 198 MobiDBLite consensus disorder prediction 175 198 - -
Alju06g2843 198 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 54 119 IPR003958 -
Alju06g2843 198 SUPERFAMILY Histone-fold 52 183 IPR009072 GO:0046982
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju06g2843 Alju-ChrAlju06 55349666 55353101 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju06g2843 41 194 CCAAT-DR1 Transcription Factor Family AT5G23090 82.468 1.99e-93 268
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YB Alju06g2843 CBFD_NFYB_HMF 1.8e-21 CL0012
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Alju06g2843 06 55349666 55353101 Alju06g2843 06 55349666 55353101 ECH