Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju06g2831 ATGGAAAACCTAGAGATCTCATCAGAATGTCCACTTTCCTCTCAGAACTCAAACAAAGGCCAATCATCAGGTAATAAGCGCCATGAGAGAAAGTACCGTGGGGTGAGACAAAGGCCTTCAGGGAGGTGGGTGGCTGAGATCAAGGACTCGTCACAGAAGCTGAGGCTGTGGCTGGGAACTTTTGACAGAGCAGAAGATGCTGCCATGGCTTATGACTGTGCTGCTACGCTTCTCAGAGGAAGAAATGCCAAGACTAACTTCCACTGTCCTTCAGGCTCAGGCTCAAGCTCGGGGATGATCGCCAATACACGCCAGGAAATTTGCAGCTTTTTGCGTAAGAATCCAAGGGCTTACCACATTCTTAAGCATGCAATCATGAAAAACCATCATGCACTTGCTTCCTCCACAGCCTTGCCTTGGAACAACCAGACCAGTAACATTACGAGAAACGGATTTGAGACGCTTGTTGAAGAGACCATAGTTTGCTGTTCCATTACTAGTTCTGAACAAGCTTCCTCTTCTTCCTCTTCTGGGTGCTGTGGGGTCTCATTTGGGAGTTCTAAGGTTTATTCTTCTGTGGTTGTGGCTCCATCTTTCAGCTCCTCGTTTTCTGAGGAAGAAACCCAGTAA 630 0.4746 MENLEISSECPLSSQNSNKGQSSGNKRHERKYRGVRQRPSGRWVAEIKDSSQKLRLWLGTFDRAEDAAMAYDCAATLLRGRNAKTNFHCPSGSGSSSGMIANTRQEICSFLRKNPRAYHILKHAIMKNHHALASSTALPWNNQTSNITRNGFETLVEETIVCCSITSSEQASSSSSSGCCGVSFGSSKVYSSVVVAPSFSSSFSEEETQ 209
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju06g2831 209 FunFam ethylene-responsive transcription factor RAP2-11 30 89 - -
Alju06g2831 209 Gene3D AP2/ERF domain 30 89 IPR036955 GO:0003700|GO:0006355
Alju06g2831 209 PRINTS Ethylene responsive element binding protein signature 54 70 IPR001471 GO:0003700|GO:0006355
Alju06g2831 209 PRINTS Ethylene responsive element binding protein signature 32 43 IPR001471 GO:0003700|GO:0006355
Alju06g2831 209 MobiDBLite consensus disorder prediction 1 22 - -
Alju06g2831 209 CDD AP2 31 87 IPR001471 GO:0003700|GO:0006355
Alju06g2831 209 SMART rav1_2 31 94 IPR001471 GO:0003700|GO:0006355
Alju06g2831 209 Pfam AP2 domain 31 80 IPR001471 GO:0003700|GO:0006355
Alju06g2831 209 SUPERFAMILY DNA-binding domain 31 88 IPR016177 GO:0003677
Alju06g2831 209 ProSiteProfiles AP2/ERF domain profile. 31 88 IPR001471 GO:0003700|GO:0006355
Alju06g2831 209 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 17 149 - -
Alju06g2831 209 MobiDBLite consensus disorder prediction 1 40 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju06g2831 Alju-ChrAlju06 55277735 55278364 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju06g2831 19 93 AP2-EREBP Transcription Factor Family AT5G19790 63.636 3.04e-26 99.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Alju06g2831 AP2 2.2e-12 CL0081
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Alju06g2831 06 55277735 55278364 Alju06g2831 06 55277735 55278364 ECH