Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju06g2811 ATGAAACATAGCTCCCTTGCTAGCGTGGTTTTCCGCTCTGCCGGCCATATCAACAATGAAGCAGGTTCTTTGCGGGACCTCTCGTCGTGCTTGAAGGTCAAGGAGCTTCCATCTTTTGCATCCTTCGTCTTTATTATAATTTTCTGTTTCAGGATGGTGAAAAGCATTCACCGACAGATCCTCCCCTTCCTTCACCCAGATGCCTTGGACGCCTTCCTTACGTCCCCAATGGCAGATGTCACTTACCTTCGCCACCGCGAACCGGACGACAATCCTCACCTTCCTGATCAGACCCTGACTCTTGATCCTCTTCCCTACTGGTCCCACGCCGATTTTGATTTCGACTTCTATCCTTCCGATCCTGAATTCCCCCCGCCCGATTCCCCCCTCCGCGCTCTCAACGCCTCCCGTGATGCTGGCTTGTCTCACCAATTTGAATCCGCCATCTCTGTACGAGGTGACGATAACTTCTCGGACCCTGGTTCGATTCCCTCCACCGATCTACTGGACCGCGAAAACCAGGTAAATTTCGTTATGGATCTGTTTCAGCAGCGCGTTGAGCAATCGCAGGTCATGGGTCACAGCGATTTGGTCTCCCATGTCCTGGATGATTCTAATTTCGGTATTATTGACGGTCATTGCGACGTGGGTGTTGATGCTTTGGGTATGGATTTCGGATTGGGCTTAGGGTTTGGCGTGGATAGGGATTCTTTGCCGGGTGATGACCATAGTGGGTTTATCGTTGAAAATTATGGTTCTGGCGGTGGTGGTGGTGGTGGAGATGGTGACCATTTTTTCGTTGGAAGGAGGGTTCCTGGATCTGAGTCCGTGGGGACACCGTCTACGGCAGGCCGAATTCGGCCTTTTGACAACTGTATACGGCTCATGGAGTTCGGGTCAGATTCTGATGAGGAGAATGGGGCTTTGGGTGTGTGCGCGCATTCGGAAGATGAATACAATGTGCATGATGAGAACGACGATGTTGCCAGCATCCCTCTTTGCTGGGATTCATTACAATTGGATGATAACAGGGAGAATGCTGAAGATTTTGAGTGGGAAGAAGTTGATGGCCGGGTTGATGAGAGGGAAGTTTTGAGCATGCTCACTGGTGAGGATGATGCGTCCGTATCAGTTCCAGTTTCCCCAGTAAATGGGCTTGAAGAAGATGCAAGCATTATGAGAGCGGGAGGTGTGGAAAATTTGGGTTGGGAAGTTTTGTTGAATGCCAATAATTTGGACACGAACCCTGATTTGGATCACGATGCAGAACCTTATTTTGGCGATCATGATGATTATATTTATACTGCAGAGTACGAAATGATGTTTGGCCAATTCGCTGACAATGAGAATCCCTTGGTTGGTCGGCCTCCGGCTTCTGTATCAGTTGTTCAGAATCTGCCGTCAGTGGTTGTGACCAAACAAGATATCGAAAATATTGGTGCACTCTGTGCAGTTTGTAAGGATGAGTTCAATTTTGAAGAACAGGCGAAGCAGTTGCCATGTTCTCATTTCTACCATGGCGAATGCATTGTCCCGTGGTTGGGAATTAGAAACACTTGTCCTGTTTGTCGATATGAGCTGCCTACTGATGATGCTGATTATGAGCGTACGAGGGTGCAAAGATCTGGCCGTAGCTAA 1638 0.4884 MKHSSLASVVFRSAGHINNEAGSLRDLSSCLKVKELPSFASFVFIIIFCFRMVKSIHRQILPFLHPDALDAFLTSPMADVTYLRHREPDDNPHLPDQTLTLDPLPYWSHADFDFDFYPSDPEFPPPDSPLRALNASRDAGLSHQFESAISVRGDDNFSDPGSIPSTDLLDRENQVNFVMDLFQQRVEQSQVMGHSDLVSHVLDDSNFGIIDGHCDVGVDALGMDFGLGLGFGVDRDSLPGDDHSGFIVENYGSGGGGGGGDGDHFFVGRRVPGSESVGTPSTAGRIRPFDNCIRLMEFGSDSDEENGALGVCAHSEDEYNVHDENDDVASIPLCWDSLQLDDNRENAEDFEWEEVDGRVDEREVLSMLTGEDDASVSVPVSPVNGLEEDASIMRAGGVENLGWEVLLNANNLDTNPDLDHDAEPYFGDHDDYIYTAEYEMMFGQFADNENPLVGRPPASVSVVQNLPSVVVTKQDIENIGALCAVCKDEFNFEEQAKQLPCSHFYHGECIVPWLGIRNTCPVCRYELPTDDADYERTRVQRSGRS 545
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju06g2811 545 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 444 530 IPR013083 -
Alju06g2811 545 Pfam Ring finger domain 483 524 IPR001841 -
Alju06g2811 545 ProSiteProfiles Zinc finger RING-type profile. 483 524 IPR001841 -
Alju06g2811 545 SUPERFAMILY RING/U-box 470 530 - -
Alju06g2811 545 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 382 528 - -
Alju06g2811 545 FunFam E3 ubiquitin-protein ligase RING1-like 444 530 - -
Alju06g2811 545 SMART ring_2 483 523 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju06g2811 Alju-ChrAlju06 55057291 55059397 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju06g2811 329 530 C3H Transcription Factor Family AT5G60820 49.065 1.60e-54 188