Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju06g2797 ATGGATTCTTGGAGATACGGTTCTGGAGATAAGGGTTTTGTGCCCAATAATACACTTCCACCTCCTTATACGCTAGCTAGAACCAAAAATTCCTTACTAGGCTGGGAATTGAAAACCCAACCTGGTTTTTCCAACGACATTTTGGCCTCGGCTCAACAACATTTAGAGAGTCAAGTTTGTGAGGAAATGGGATTTCCAGAAATGTTGGGGAAACATCAGTTGTCTAATGACCCGCTTGGTTGTATTTTGAATGATCCAAATTCATTTTCTGGAGGTGAAGACTCTGCTTCAAGGCTTTCAAACTCTGGGGTTGAATCTAATATCCGGGATTCTCTCATTGATTTGAAGTTAGGAAGAGTTGGTGATCAAAGAGATGCCAGTGAATCACCATTTTCTAAAGGTATTCCTCTTTTGTGTTCTTCAGAGTCATCTACAACCCCCAAGAGAGTTAAAACTTCAGGGGTTCAGTCACAGACTTCTTACTGCCAAGTCTATGGCTGCAACAAGGATCTAAGCGCCTGTAAAGACTACCACAAGAGGCACAAAGTTTGTGAGATTCACTCCAAGACTTCTAAAGTCATAGTGAATGGCATAGAGCAAAGGTTTTGTCAACAATGTAGTAGGTTTCATTTGCTGGCTGAATTTGATGATGTTAAGCGCAGCTGTCGCAAACGCCTTGCAGGCCATAATGAGCGTCGTAGAAAGCCACAAATGGGTACTCACTCTGGAAAGGGCAGGAGGTTGCTTCAGTCATATAATGACAGCAGATTCCAAGGTAGCATGCTAACAGCAGCATCTTTTATCTGCCAAGAGATACTCCCTAGTGGTGTTTTGTATGGTGCTGATAACTGGTGGAAACCTACAAAGTCCCAAGGTGGCAATGATTTTAGGCATATCTCTGCTATGCCTATCACAAACGTGCATTCTCACTCAAGATCTCTGCTTCTTTCATCTGCTGAAAAGCAATATCCACCTCTGAATGAAAACGGTGCCGCTATATGCACTACAGGAAGCGTATTCTGTGAGAACAACAGTTTGTATCCACCTACTCTTGGAGATGCTTATACTTCCGGTCCACGATCATCGTACCAAGGCACCTTCTTAGGAAGTGAAGACTTTAATAATGTTTTTGATACAGCATCAACCATTCGGGGATTATCAGGACTCACAGACTCAGGTTGTGCTCTCTCTCTTCTGTCATCTCAATCCCATAACTCATCAAGCCATTCATCGGTAATCCCCGTGGTTACTCCGGGAAGCCACGGCCACTACAGCCTGAGTCATGCCTCTGAAAAGATCATGGGAATAAGCTCTCAGGCTTCAACAGGTGGGTTTTCAGCATCAGGTAGTTTTCCATCAGAAATTAATCATCCTGATGGAGGTCGTTTTGGTCCTGTGTTGCTATTAGACCATAATGACATTGTCAACCTAGAAATCGCAGATGGTGATTTTGGAAGAGGAAAAAGCAAGTTCAGTTCTTCTGAAGATTTTTAG 1494 0.4311 MDSWRYGSGDKGFVPNNTLPPPYTLARTKNSLLGWELKTQPGFSNDILASAQQHLESQVCEEMGFPEMLGKHQLSNDPLGCILNDPNSFSGGEDSASRLSNSGVESNIRDSLIDLKLGRVGDQRDASESPFSKGIPLLCSSESSTTPKRVKTSGVQSQTSYCQVYGCNKDLSACKDYHKRHKVCEIHSKTSKVIVNGIEQRFCQQCSRFHLLAEFDDVKRSCRKRLAGHNERRRKPQMGTHSGKGRRLLQSYNDSRFQGSMLTAASFICQEILPSGVLYGADNWWKPTKSQGGNDFRHISAMPITNVHSHSRSLLLSSAEKQYPPLNENGAAICTTGSVFCENNSLYPPTLGDAYTSGPRSSYQGTFLGSEDFNNVFDTASTIRGLSGLTDSGCALSLLSSQSHNSSSHSSVIPVVTPGSHGHYSLSHASEKIMGISSQASTGGFSASGSFPSEINHPDGGRFGPVLLLDHNDIVNLEIADGDFGRGKSKFSSSEDF 497
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju06g2797 497 MobiDBLite consensus disorder prediction 1 21 - -
Alju06g2797 497 FunFam Squamosa promoter-binding-like protein 14 153 223 - -
Alju06g2797 497 SUPERFAMILY SBT domain 161 240 IPR036893 GO:0003677|GO:0005634
Alju06g2797 497 ProSiteProfiles Zinc finger SBP-type profile. 159 236 IPR004333 GO:0003677
Alju06g2797 497 Gene3D - 152 223 IPR036893 GO:0003677|GO:0005634
Alju06g2797 497 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 90 467 IPR044817 GO:0003677
Alju06g2797 497 MobiDBLite consensus disorder prediction 227 246 - -
Alju06g2797 497 Pfam SBP domain 162 235 IPR004333 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju06g2797 Alju-ChrAlju06 54893709 54897642 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju06g2797 113 279 SBP-box Gene Family AT1G69170 52.096 7.89e-47 166
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SBP Alju06g2797 SBP 2.5e-30 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Alju06g2797 06 54893709 54897642 Alju06g2797 06 54893709 54897642 ECH