Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju06g2745 ATGGAAGAATCGAAGCATGTGTGTAAGTTCTGCCGGAAAAGCTTCCCGTGCGGCAGATCTTTGGGCGGTCATATGAGGTCTCACGTCTCCGGCGGCAATTATAATAATAATAATTCAGCTGCGGCGGAGGATTCAGTTGCAGCGTCTGCAACTGGCTACGGTCTGAGAGAGAAGAGGATCAAGACTTGGAGAGTCGCCGATTCCGGTGACGGCGGCGGCGCTGAAGCATCACCGAACAAGTTGTGCAAGCAGTGTGGTAAATCGTTTAACTCTTGGAAGGCTCTGTTTGGTCACATGAAATGTCACTCCGAGAAAGGAAGAGCTTCTGTTAGCTTGGAAGATCAAGATTCATGGACTGTCACGGATAGCCAATCTGACGACAACGAAGCTCCCAGGCCAAGAACAAGAACAAGATCCAAGAGAACAAGAACTAATTACACTTCGTCTCTGTCCTTCTCCAATCTTTCCTCTTCTGTTTCTGAAATCGAGCAAGAGCAACAAGAGGTCGCTTTGAGCTTGATCATGCTTAGCAGGGGATCTCCAGAAATGAGGTCCGAGAAGAAATCAAAAGCATCAGAGCTTTTGAGTCCAAGAATTGGAATCAGGAAGAGCAAGACGAAGAAGCTGGATTTTGAATCTGCAATGGAGTGTTGTGAGGAAGGTGATAGAGAGCAAGGGAAGAGGAATTTCAAATGCTTAGGTTCCGGATTGGACTCAAATAAGAGCTCTCACAGAGGAGGGAAATTCGAGTGTACTACTTGCAACAAGATCTTCGATTCTTACCAAGCTCTTGGGGGCCATAGAGCCGGCCACAAGAAGATCACCAGAGACTATTTTGTTCCAATTGACGAGGCCAGTGAGAATTCCATAAAACCTTATTTGTCTCAACATGAAGCAATTTCTGGTTTAGATCTTCATGAATGCTCAGTTTGCCTCAAGAGTTTTCCATCTGAGCAGGCATTGGATGAGCATAAGAGATCCCATTCAGCTGAAGCATCTGAGAGTAGAAAAGCTGAAAGGATTAGCAGAGGTTTGATTGAGGAACCAGTTGAGAAGATTAGGGAATTGATTGATCTTAATCTTCCAGCTGATGATGCGGAAGTTGCAGAAGAGGAAGAAGACAGCAACAATAATAGCAATTCTGAATGTTACAGATCGTCATCACCCTGGTGGGCAAGAAGCATCCACAACAAGCAGGAGGTTCTAGTAGGCCTATTCTCTAACTAA 1227 0.454 MEESKHVCKFCRKSFPCGRSLGGHMRSHVSGGNYNNNNSAAAEDSVAASATGYGLREKRIKTWRVADSGDGGGAEASPNKLCKQCGKSFNSWKALFGHMKCHSEKGRASVSLEDQDSWTVTDSQSDDNEAPRPRTRTRSKRTRTNYTSSLSFSNLSSSVSEIEQEQQEVALSLIMLSRGSPEMRSEKKSKASELLSPRIGIRKSKTKKLDFESAMECCEEGDREQGKRNFKCLGSGLDSNKSSHRGGKFECTTCNKIFDSYQALGGHRAGHKKITRDYFVPIDEASENSIKPYLSQHEAISGLDLHECSVCLKSFPSEQALDEHKRSHSAEASESRKAERISRGLIEEPVEKIRELIDLNLPADDAEVAEEEEDSNNNSNSECYRSSSPWWARSIHNKQEVLVGLFSN 408
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju06g2745 408 Gene3D Classic Zinc Finger 235 337 - -
Alju06g2745 408 Pfam C2H2-type zinc finger 306 330 - -
Alju06g2745 408 Pfam C2H2-type zinc finger 6 28 - -
Alju06g2745 408 Pfam C2H2-type zinc finger 82 104 - -
Alju06g2745 408 Pfam C2H2-type zinc finger 249 273 - -
Alju06g2745 408 SUPERFAMILY beta-beta-alpha zinc fingers 81 271 IPR036236 -
Alju06g2745 408 MobiDBLite consensus disorder prediction 112 145 - -
Alju06g2745 408 ProSitePatterns Zinc finger C2H2 type domain signature. 251 271 IPR013087 -
Alju06g2745 408 SUPERFAMILY beta-beta-alpha zinc fingers 2 32 IPR036236 -
Alju06g2745 408 ProSiteProfiles Zinc finger C2H2 type domain profile. 6 28 IPR013087 -
Alju06g2745 408 ProSiteProfiles Zinc finger C2H2 type domain profile. 249 271 IPR013087 -
Alju06g2745 408 ProSitePatterns Zinc finger C2H2 type domain signature. 8 28 IPR013087 -
Alju06g2745 408 MobiDBLite consensus disorder prediction 367 387 - -
Alju06g2745 408 ProSiteProfiles Zinc finger C2H2 type domain profile. 306 333 IPR013087 -
Alju06g2745 408 PANTHER C2H2-LIKE ZINC FINGER PROTEIN 1 391 - -
Alju06g2745 408 SMART c2h2final6 80 102 IPR013087 -
Alju06g2745 408 SMART c2h2final6 6 28 IPR013087 -
Alju06g2745 408 SMART c2h2final6 306 328 IPR013087 -
Alju06g2745 408 SMART c2h2final6 249 271 IPR013087 -
Alju06g2745 408 ProSitePatterns Zinc finger C2H2 type domain signature. 308 328 IPR013087 -
Alju06g2745 408 ProSitePatterns Zinc finger C2H2 type domain signature. 82 102 IPR013087 -
Alju06g2745 408 ProSiteProfiles Zinc finger C2H2 type domain profile. 80 107 IPR013087 -
Alju06g2745 408 MobiDBLite consensus disorder prediction 112 126 - -
Alju06g2745 408 Gene3D Classic Zinc Finger 1 107 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju06g2745 Alju-ChrAlju06 54413707 54414933 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju06g2745 306 363 C2H2 Transcription Factor Family AT1G26610 44.068 7.25e-06 46.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Alju06g2745 zf-C2H2_6 2.3e-10 CL0361