Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju06g2731 ATGGGTTGTGTGAATGCCAAGCAGGCGGTGTCTGTGACGCCTGCCATTGACCACTCCGGTGTATTTCGTGGCAATGCGGGTACGGGAAATTCGGGGAGGAATTTAGGGGAGTCGGACAAGAAGAAGAAGAGTGAGTCAGTGGGGCTGAGTAGAAGCGAGGTAGGTGAGTCGGGAAGGGTGAGTTCAAATGTAGGTTGTGATTCGTATAGTTTCAGATTGGGGAATCTGCAAAAGTATGTAGAAGGAGAGCAAGTAGCAGCGGGTTGGCCGGGTTGGCTTACCGCCGTCGCCGGTGAAGCCATTCAGGGCTGGGTGCCACTCCGAGCTGATGCGTTTGAGAAACTTGAGAAGATTGGACAAGGAACATACAGCAGTGTCTTCCGAGCGAGAGAACTTGAGACGGGGAAGATAGTGGCTCTGAAGAAGGTACGGTTTGACAACTTTGAGCCCGAAAGCGTCAGGTTCATGGCTCGAGAAATAATGATTCTCCGAAGGCTTGATCATCCAAACATTATAAAATTGGAGGGCTTGATTACTTCCAAATTGTCATGTAGCATATATCTTGTATTCGAGTATATGGAACATGACATTACGGGGCTCTTATCTTCCCCTGATATCAAGTTTAGTGAACCGCAGATTAAATGCTACATGAAGCAGTTGTTATCTGGACTTGACCATTGTCATTCACGTGGTGTAATGCACCGTGACATCAAGGGATCTAATCTTCTAGTGAATAATGATGGGATACTAAAGGTAGCTGATTTTGGATTGGCGAACTTCTCAAATCATGGGCACAAACAGCCCCTCACTAGTCGTGTAGTTACATTGTGGTATCGTCCTCCTGAACTTTTACTGGGTTCAACTGACTATGGTCCTTCTGTGGATCTTTGGAGCATTGGCTGCGTATTTGCTGAACTACTTGTCGGGAAGCCTATCCTTCAGGGGAGAACAGAGGTTGAACAATTGCACAAAATCTTCAAGCTTTGTGGCTCTCCACCTGAAGAATACTGGAAAAAGTCTAGACTCCCTCATGCGACGTTATTTAGGCCTCAGCAACCATATAGTAGTTGTCTCCGAGAGACCTTTAAAGATTTGCCTCCAACTAGTGTGAACTTGTTACAGACTCTTCTTTCTGTCGAACCATACAAACGTGGAACTGCCTCCTCTGGTCTCTCATCAGAGTATTTCAAAACAAAGCCATATGCTTGTGAACCATCAAGCTTGCCGGTATACCCACCTAGCAAGGAGATTGATGTGAAACAGCGGGAGGAGTCAAGGAGGAAAAAGATTGGTGGAAGAGCACGTGGACCTGAAACAAGAAAACCATCAAGAAAGCCATTAGGATTCAACAAATTAGTCCCAACAGAGGATTTGGCAAGTCAAACCCAGAAATTCCAAAGGGTAAATGGCAGGTCAGTCCACATCCTTAAAGAAGGGAGTACCAATGTAGGTAAGGAGGAACCAAAGCTGTCTAGTGGTAAACCAGATGATGCTTCCCATGCGAAGAATGCATCTCAAGGAGATATTCCCTTTTCTGGGCCGTTGCAAGTTTCCACATCAAGTGGCTTTGCATGGGCAAAAAGACGTAAAGATGACATTTCAATAAGATCCCACTGTCGATCTATTTCAAGGGGGCATATTGTCAATCCATTAGAGCCTTCTGTACTAAATTCAGTGAATAACTTTGATTCTAGAAGCATGGAAAATAAGGATTGTCTGCCACGCTCCAACTCTCAGAGCCACGATCCCCTTGAAATCCCTAGGCTTGCCATGCAAAACCAATGGAGCAAGTTTGATCGCCCGGATTCTTTTGATGCTTCTGACGAATACCACTCACAAGAGCTATCTATGGCACTTTATCATAGGGAGGATTCAATATCCAAGAGAAGTAACCTGAGTTATCAGGATCACGGAGAGAAGGTTGAGTTTTCAGGACCCCTGCTATCTCAAATGCATACTGTTGATGAGCTCTTAGAAAAACATGAGCGCCACATCCGCCGAACAGTCCGAAGATCTTGGTTTCAAAGAGGTAAGAAGCAAGGGAAGCAAGTATAA 2055 0.454 MGCVNAKQAVSVTPAIDHSGVFRGNAGTGNSGRNLGESDKKKKSESVGLSRSEVGESGRVSSNVGCDSYSFRLGNLQKYVEGEQVAAGWPGWLTAVAGEAIQGWVPLRADAFEKLEKIGQGTYSSVFRARELETGKIVALKKVRFDNFEPESVRFMAREIMILRRLDHPNIIKLEGLITSKLSCSIYLVFEYMEHDITGLLSSPDIKFSEPQIKCYMKQLLSGLDHCHSRGVMHRDIKGSNLLVNNDGILKVADFGLANFSNHGHKQPLTSRVVTLWYRPPELLLGSTDYGPSVDLWSIGCVFAELLVGKPILQGRTEVEQLHKIFKLCGSPPEEYWKKSRLPHATLFRPQQPYSSCLRETFKDLPPTSVNLLQTLLSVEPYKRGTASSGLSSEYFKTKPYACEPSSLPVYPPSKEIDVKQREESRRKKIGGRARGPETRKPSRKPLGFNKLVPTEDLASQTQKFQRVNGRSVHILKEGSTNVGKEEPKLSSGKPDDASHAKNASQGDIPFSGPLQVSTSSGFAWAKRRKDDISIRSHCRSISRGHIVNPLEPSVLNSVNNFDSRSMENKDCLPRSNSQSHDPLEIPRLAMQNQWSKFDRPDSFDASDEYHSQELSMALYHREDSISKRSNLSYQDHGEKVEFSGPLLSQMHTVDELLEKHERHIRRTVRRSWFQRGKKQGKQV 684
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju06g2731 684 CDD STKc_CDK9_like 112 396 - -
Alju06g2731 684 PANTHER CELL DIVISION PROTEIN KINASE 110 400 - -
Alju06g2731 684 Gene3D Transferase(Phosphotransferase) domain 1 195 435 - -
Alju06g2731 684 MobiDBLite consensus disorder prediction 480 496 - -
Alju06g2731 684 ProSitePatterns Serine/Threonine protein kinases active-site signature. 232 244 IPR008271 GO:0004672|GO:0006468
Alju06g2731 684 SMART serkin_6 112 396 IPR000719 GO:0004672|GO:0005524|GO:0006468
Alju06g2731 684 MobiDBLite consensus disorder prediction 407 515 - -
Alju06g2731 684 MobiDBLite consensus disorder prediction 416 445 - -
Alju06g2731 684 MobiDBLite consensus disorder prediction 21 61 - -
Alju06g2731 684 FunFam probable serine/threonine-protein kinase At1g54610 99 194 - -
Alju06g2731 684 MobiDBLite consensus disorder prediction 35 49 - -
Alju06g2731 684 ProSitePatterns Protein kinases ATP-binding region signature. 118 141 IPR017441 GO:0005524
Alju06g2731 684 Gene3D Phosphorylase Kinase; domain 1 99 194 - -
Alju06g2731 684 Pfam Protein kinase domain 112 396 IPR000719 GO:0004672|GO:0005524|GO:0006468
Alju06g2731 684 MobiDBLite consensus disorder prediction 455 469 - -
Alju06g2731 684 ProSiteProfiles Protein kinase domain profile. 112 396 IPR000719 GO:0004672|GO:0005524|GO:0006468
Alju06g2731 684 FunFam probable serine/threonine-protein kinase At1g54610 195 435 - -
Alju06g2731 684 SUPERFAMILY Protein kinase-like (PK-like) 106 401 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju06g2731 Alju-ChrAlju06 54299655 54304734 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju06g2731 104 456 Core Cell Cycle Gene Families AT5G10270 48.509 1.09e-114 352
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_CDK-CRK7-CDK9 Alju06g2731 Pkinase 2.1e-68 CL0016